BAC Information

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BAC

Clone NameMSMg01-405C20
Chromosome11 (Build37)
Map Location 24,245,895 - 24,246,315
singlet/doubletsinglet
Overlap genenone
Upstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405C20.T7 (MSMg01no405_c20.b1)MSMg01-405C20.TJ (MSMg01no405_c20.g1)
ACCAG503670AG503671
length804802
length of high quality
(start - end)		473 (43 - 515)421 (76 - 496)
definitionCHROMAT_FILE: MSMg01no405_c20.b1 PHD_FILE: MSMg01no405_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:05 2005CHROMAT_FILE: MSMg01no405_c20.g1 PHD_FILE: MSMg01no405_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTTTGGTTTCTCCATCTATGGTAATTTAGAGTTTTGCTGGGTAT
AGTAGCCTGGGCTGGCATTTGTCTTCTCTTAGGGTCTGTATAACATCTGT
CCAGGATCATAGTCTTTCATAGTCTCTGGTGAGAAGTCTGGGGTAGTTCT
AATAGGCCTGCCTTTATATGTTAATTGACCTTTTTCCCTTACTGCTTTTA
GTATTCTATCTTTCTTTAGTGCATTTGTTGTTCTGATTATTATGTGTCGG
GAGGAATTTATTTTCTGGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTTG
CATGTTCATGGGCATCTCTTTCTTTAGGTTTGGGAAGTTTTCTTCTATAA
TTTTGTTGAAGATATTTACTGGCCCTTTAAGTTGAAAATCTTCATTCTCA
TTTACTCCTATTATCTGTAAGTTTGGTCTTCTCATTGTGTCCTGGATTTC
CTGGATATTTTGAGTTAGAATCCTTTTGTATTTTCCATTTTCCTTGATTG
GTGTGTCCTTGTTTTCTATTGGACCTCCTGGCACTGAGATTTTCTCTCCC
ATCTTCCGGTATTTTGTTGTCGTGTGGTGGCCTTTTGTGTTTCCCAATTT
CTTTCTCAATTTTTTTCCCTCTCGTGTTGGTTTCCCGTTGGTATTTTTTT
TGCAACGCTCCTATTTCCCTTTTTTTTTTCTGTATTGCTTTCTTTCTTTT
CTCTTTCCTCTTATATCTATTTTCATTTTCTTATTCATTTCATTTCCTCA
CCAG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCATCACACATGCTGTAATCATAT
GCTCTCTGTAGAGTCAAGGGATGTGCAGTTCCAAGTTCATTCATCAATGA
CCTAGCAAATTAATTGCACGTCTTGTCAAAAGCAGCCCTGTCCTACATGG
CGCTCTGTGTGGATCATGGCTCAAATCTTTAGAGTAACCTCCCCCCAAGG
CAAGCAAAGACACCTTTAGCAAGTGTCAGGTTCAAGTGTGTAGGTCTCCA
GGTATGAAATCTGCTCCATGTTGTCTCTTCTATACTTTATGCAGCGTCAG
GGTCCTTGACACAATGAACTGCTTTGGAAATTTAGTAAGTGAAGGATGGG
AAAGGAAAAGGTCAGCCCTGGGGTTAGGGACAGGGATTCGTCCCGGCACA
GGAACGTGCTCCGAAGGTTTCTTGGTCTAAAAATACCCTGTTCCTTCAGA
TTTCTTAGTCTGAAGTTGTTCTACCTTGGGCAGGTTCCTGTTTTAAGAAC
CTCCCTTATGAGGCAGCCGCCTCGTTAATTTTTTCTTTTCCCACTATTTC
TTTTTCCTCCTTTTTTTTCTCCCTCTCATTTTTCTATTATTTACCTTTTT
TTTTTTTTCACACTTTTTTCTTTCTTTTTTCGTTTAGTCATTACTCTTTC
TCCCCTCTTTTTTTCCTCTCCCCTTTTTTCTGCATCTTATTTTCCTTTTA
CCCATTTTCCCCCTTACTTTTTTCTTTTCCCCTATTTCTTTCCTTATTCC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_c20.g1 MSMg01no405_c20.g1 CHROMAT_FILE:
MSMg01no405_c20.g1 PHD_FILE: MSMg01no405_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:05 2005
         (421 letters)



>mm_chr11_24245695_24246515
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatcacacatgctgtaatcatatgctctctgtagagtcaagggatgtgcagttccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatcacacatgctgtaatcatatgctctctgtagagtcaagggatgtgcagttccaag 260

                                                                       
Query: 61  ttcattcatcaatgacctagcaaattaattgcacgtcttgtcaaaagcagccctgtccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattcatcaatgacctagcaaattaattgcacgtcttgtcaaaagcagccctgtccta 320

                                                                       
Query: 121 catggcgctctgtgtggatcatggctcaaatctttagagtaacctccccccaaggcaagc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggcgctctgtgtggaccatggctcaaatctttagagtaacctccccccaaggcaagc 380

                                                                       
Query: 181 aaagacacctttagcaagtgtcaggttcaagtgtgtaggtctccaggtatgaaatctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagacacctttagcaagtgtcaggttcaagtgtgtaggtctccaggtatgaaatctgct 440

                                                                       
Query: 241 ccatgttgtctcttctatactttatgcagcgtcagggtccttgacacaatgaactgcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgttgtctcttctatactttatgcagcgtcagggtccttgacacaatgaactgcttt 500

                                                                       
Query: 301 ggaaatttagtaagtgaaggatgggaaaggaaaaggtcagccctggggttagggacaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaatttagtaagtgaaggatgggaaaggaaaaggtcagccctggggttagggacaggg 560

                                                                       
Query: 361 attcgtcccggcacaggaacgtgctccgaaggtttcttggtctaaaaataccctgttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcgtcccggcacaggaacgtgctccgaaggtttcttggtctaaaaataccctgttcct 620

            
Query: 421 t 421
           |
Sbjct: 621 t 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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