BAC Information

Click to search

BAC

Clone NameMSMg01-406F02
Chromosome11 (Build37)
Map Location 89,469,988 - 89,646,624
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406F02.T7 (MSMg01no406_f02.b1)MSMg01-406F02.TJ (MSMg01no406_f02.g1)
ACCAG504541AG504542
length764772
length of high quality
(start - end)
536 (72 - 607)446 (74 - 519)
definitionCHROMAT_FILE: MSMg01no406_f02.b1 PHD_FILE: MSMg01no406_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:35 2005CHROMAT_FILE: MSMg01no406_f02.g1 PHD_FILE: MSMg01no406_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,646,156 - 89,646,624)(89,469,988 - 89,470,433)
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCTTTCCTGTCGACTATAGTCTGTCAAGCTAACAAAACAAATGAAA
TAACAAAACCCCCAGTAATCAATACCACATTATCATCATAGCTGAGCAGT
GTGTAGAATCTGAGAAGAGGCTAAATGCTAGAATGATCCTAAAGTGCTTT
CTACCACATCTTTGACATCTTGCTTTATTCTGTCTGCTGCATGGTGTCAT
GGAAGTCCATATTAGAAGGGAATTTGTACCCAATGGTAAATTCCAAAGGT
GTGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGTGTGTCCAGCACTTCTC
CTCTTGCTTTAATGAGAAGTGGAGCCTAGAGAGAATGAGAATTCTAGAGA
GAATGAGATAACAAACATAGAAGTTAGAGACTGAGTCTCAGTCTTGCTCT
AAGGAACCAACACTCAAAGAAATTGAGAATGGGCACTTCCAGGGTTGGTT
TTCATGAGAACTACAGAAACTGATACATGTAAAAATAATGGCTTACAACA
TCTCTCATGTACTAAAAACAGGGAAAGGGAGCTAGTGTTACCATCCTATC
GTGTGCCTTTAAGTCTCAGCCTTAGTCTTCGGCAGGACATCCCATGGNGC
ATGTCCTGCCTTATCATGGTCTTTGCTCCCTGAAGAAAGTGGAGTTTATC
TCAAAGACATTTTTCCTACTGAGGGTTACTAAAAAAAAATGAGAGCTTGT
ATTGCCCTATACTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGGTGCTATCTTAGACGGCTGTTCA
CCTTGAAAGGTTATGAATTTGTAACACATAGGATACAAATGTTCCCTCTG
GGGCTCTAACTGTTTTAGGATCCCTGGTAAAGAGAAATGGGTTTCTCTGG
AGGTGGGGCGGGTTAGGGGATGTAGCAACTCCCAAGGCATTATAGAGACA
ATGTAGCCCAAGAGAACGCAAGAGTGTTTCAATTCATGCTCACATGCTGT
TGGCAGAATGTATTCTAGGTGTTTTTGTTATATGGTAGTTTTTCATTATA
CTCAAAACAAGGTAATTGCTTCCTATACCTGCTTGGGGTATACAGACAAG
CTATCTCAAAAGCTGATATCTGCATGGAAAGGGAAACAGTAGACCTTTGA
GGGGGGACACGGGAAACCCCTGGTTTCTAGTTTGCACTCTGTGCAGGGGT
TACTGCTTGCTCCACTCAAGTGTCAAGTAGAGCAATTGGAAAACAAACAG
AAGATAGAGGGAGTCTAGGCTAGGCAACAGATAGCATCCATTGCATGTTG
ATCAAGGAAATGAAATGCTCCTACAGCTTGCTCATTCAGGAAGGGTCTTC
CTTTCGCGATTAAAACTATAACGGACAGGTGACGCTATTTTGGGAGCTTT
ACTTATTCCCTTGCGAAACCGCCCAATACATATAGAGGCTCTGGCTTTTT
TCGCCTATGTTTTCTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_f02.b1 MSMg01no406_f02.b1 CHROMAT_FILE:
MSMg01no406_f02.b1 PHD_FILE: MSMg01no406_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
         (536 letters)



>mm_chr11_89645689_89646624
          Length = 936

 Score =  899 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 68  tagctgagcagtgtgtagaatctgagaagaggctaaatgctagaatgatcctaaagtgct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tagctgagcagtgtgtagaatctgagaagaggctaaatgctagaatgatcctaaagtgct 877

                                                                       
Query: 128 ttctaccacatctttgacatcttgctttattctgtctgctgcatggtgtcatggaagtcc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttctaccacatctttgacatcttgctttattctgtctgctgcatggtgtcatggaagtcc 817

                                                                       
Query: 188 atattagaagggaatttgtacccaatggtaaattccaaaggtgtgtgtgtgcgtgtgtgt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 atattagaagggaatttgtacccaatggtaaattccaaaggtgtgtgtgtgcgtgtgtgt 757

                                                                       
Query: 248 gtgtgtgtgcgtgtgtgtgtccagcacttctcctcttgctttaatgagaagtggagccta 307
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtgcgtgtgcgtgtgtgtgtccagcacttctcctcttgctttaatgagaagtggagccta 697

                                                                       
Query: 308 gagagaatgagaattctagagagaatgagataacaaacatagaagttagagactgagtct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gagagaatgagaattctagagagaatgagataacaaacatagaagttagagactgagtct 637

                                                                       
Query: 368 cagtcttgctctaaggaaccaacactcaaagaaattgagaatgggcacttccagggttgg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cagtcttgctctaaggaaccaacactcaaagaaattgagaatgggcacttccagggttgg 577

                                                                       
Query: 428 ttttcatgagaactacagaaactgatacatgtaaaaataatggcttacaacatctctcat 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttttcatgagaactacagaaactgatacatgtaaaaataatggcttacaacatctctcat 517

                                                            
Query: 488 gtactaaaaacagggaaagggagctagtgttaccatcctatcgtgtgcc 536
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtactaaaaacagggaaagggagctagtgttaccatcctatcgtgtgcc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no406_f02.g1 MSMg01no406_f02.g1 CHROMAT_FILE:
MSMg01no406_f02.g1 PHD_FILE: MSMg01no406_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
         (446 letters)



>mm_chr11_89469788_89470633
          Length = 846

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggtgctatcttagacggctgttcaccttgaaaggttatgaatttgtaacacatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggtgctatcttagacggctgttcaccttgaaaggttatgaatttgtaacacatagga 260

                                                                       
Query: 61  tacaaatgttccctctggggctctaactgttttaggatccctggtaaagagaaatgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaatgttccctctggggctctaactgttttaggatccctggtaaagagaaatgggtt 320

                                                                       
Query: 121 tctctggaggtggggcgggttaggggatgtagcaactcccaaggcattatagagacaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctggaggtggggcgggttaggggatgtagcaactcccaaggcattatagagacaatg 380

                                                                       
Query: 181 tagcccaagagaacgcaagagtgtttcaattcatgctcacatgctgttggcagaatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcccaagagaacgcaagagtgtttcaattcatgctcacatgctgttggcagaatgtat 440

                                                                       
Query: 241 tctaggtgtttttgttatatggtagtttttcattatactcaaaacaaggtaattgcttcc 300
           |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tctaggtggttctgttatatggtagtttttcattatactcaaaacaaggcaattgcttcc 500

                                                                       
Query: 301 tatacctgcttggggtatacagacaagctatctcaaaagctgatatctgcatggaaaggg 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatacctgcttgtggtatacagacaagctatctcaaaagctgatatctgcatggaaaggg 560

                                                                       
Query: 361 aaacagtagacctttgaggggggacacgggaaacccctggtttctagtttgcactctgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacagtagacctttgaggggggacacgggaaacccctggtttctagtttgcactctgtg 620

                                     
Query: 421 caggggttactgcttgctccactcaa 446
           ||||||||||||||||||||||||||
Sbjct: 621 caggggttactgcttgctccactcaa 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)