BAC Information

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BAC

Clone NameMSMg01-407I22
Chromosome11 (Build37)
Map Location 45,800,070 - 45,800,525
singlet/doubletsinglet
Overlap geneSox30
Upstream geneEbf1, LOC382510, LOC633082, Clint1, Lsm11, Thg1l
Downstream geneLOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407I22.T7 (MSMg01no407_i22.b1)MSMg01-407I22.TJ (MSMg01no407_i22.g1)
ACCAG505488AG505489
length759760
length of high quality
(start - end)		65 (65 - 129)455 (77 - 531)
definitionCHROMAT_FILE: MSMg01no407_i22.b1 PHD_FILE: MSMg01no407_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:14 2005CHROMAT_FILE: MSMg01no407_i22.g1 PHD_FILE: MSMg01no407_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCNGGA
TTCATAAGCTACGTAGTAGCTCAACATCTGTAAACACCTAACTTAAACCA
CTAACCTATCCTAAGAGCCTCTGCATCTTGACNNCCTAAGNAAAGCATTC
TGCCAAAAACACGTGTAAAACAANCCCCCACTGTATTTTGCATACAGATC
CTCTGCTCCAATGACTCATCGAGGACTTTTCATACAAATCTATTAATTTA
TATGGTGTCCCCNATAANAAAACCACCTTCCTCCCTGGCCCANAACTAAT
TTGCGGGAGCTGGGAGGGGGGCGGGAGAGCTGTGCTGGCTGGGGCGCTGG
GGGGGGGGGGGCGCAGGTGCTTTATTGAGGAGAAGGAGAACCTCGGAGGG
GCGCTCTCCCCAATGTAAANNNNAAAGGTAACCTTTTTTTTCTTCTAAAA
TCTTCAAGGNNNNNGAAAGAACCCCACCCCCCGTTTTTGGGAGCAAGGTA
CCTGGNNNNNGGTACCCCAAAAAAAAATCTTTNNCCCCCNNNNAAAAAAA
AAAAACCCCCCCAAAAAAACACCCCGGGGAAAAATAAAAAAAAAAAGTCA
NAAAANANNNNNNAAAAAAANNAAAAGAAANAAAGAAAAAAAGGAGAAAA
AATTCTAAATTNNNAAATNNTANTAAAAAAAAAAATTTTTTTCTTTCTAA
TAAAAATAATAATAATTTTTTATTGTTTTTATTAATATTATTTTTTATTT
TTCTTTTTT

ACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGAAATATTTAATAACGCGT
TTCTAAATCACTAGTGGAATAATGAGGATTTACTTACTTTTTGCATCACA
AATGTTGGTTAAGGGTAGAAGACTACTAAGGGTAAAGGACAGCTAAAATA
AACATTCATAGAAAAGTGGTTGTTTAGACAATAATGCTAAAAGCAGAGAA
GAAAAAACATACTCCTGAATTAGAAAGTTGTTAATTGGTCAAATTAAGAG
AAACCTATCAAAATGTTATGTGAAAAATTAGTCTAATTAGAATTGGGAAC
AAAACACCCATGGAAGGAGTTACAGAGAAAAATTAGTCTAAGTGTTTTAA
GTCAGTGCAAATAAAAATTAGGCAGTTGTAGGCTGGAGAGATAGCTCAGC
AATTAAAAGCACTTAACTGCAGAGGACCCAAGTTTCATTCCAGGTGTAGG
CATAATGTTTCTATGCCTATAAAAAATAATAAATAAAATAATGTATACTG
TTCAAATGCTGATTTCTCTTCCCCTAGAACTTGTTGAAATCCAGACACAG
CACCATATGTGCTTCCCCAGAATCTCTTCTCCTGAGTTTGGATTAACATT
GTTCCCCACTTTTTTTTTTGGCTTCGTTCACTAAAAGCCGAACAACCCCA
GGCCCGGGGTTAACCTCCAAAATAGGCGTGGTAACTCTTGCCCGTCCCGA
GACAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_i22.g1 MSMg01no407_i22.g1 CHROMAT_FILE:
MSMg01no407_i22.g1 PHD_FILE: MSMg01no407_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:14 2005
         (455 letters)



>mm_chr11_45800064_45800920
          Length = 857

 Score =  801 bits (414), Expect = 0.0
 Identities = 447/460 (97%), Gaps = 9/460 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgaaatatttaataacgcgtttctaaatcactagtggaataatgaggatttac--- 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 462 agtgtgaaatatttaataacgcgtttctaaatcactagtggaataatgaggatttactca 403

                                                                       
Query: 58  ttactttttgcatcacaaatgttggttaagggtagaagactactaagggtaaaggacagc 117
           ||  ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 402 tt--tttttgcatcacaaatgttgggtaaggatagaagactactaagggtaaaggacagc 345

                                                                       
Query: 118 taaaataaa-cattcatagaaaagtggttgtttagacaataatgctaaaagcagagaaga 176
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 344 taaaataaaacattcatagaaaagtggttgtttagacaataatgctaaaagcagaaaaga 285

                                                                       
Query: 177 aaaaacatactcctgaattagaaagttgttaattggtcaaattaagagaaacctatcaaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaaaacatactcctgaattagaaagttgttaattggtcaaattaagagaaacctatcaaa 225

                                                                       
Query: 237 atgttatgtgaaaaattagtctaattagaattgggaacaaaacacccatggaaggagtta 296
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 224 atgttatgtgaaaaattagtctaattagaactgggaacaaaacacccatggaaggagtta 165

                                                                       
Query: 297 cagagaaaaattagtctaagtgttttaagtcagtgcaaataaaaattaggcagttgtagg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cagagaaaaattagtctaagtgttttaagtcagtgcaaataaaaattaggcagttgtagg 105

                                                                       
Query: 357 ctggagagatagctcagcaattaaaagcacttaactgcagaggacccaagtttcattcc- 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 104 ctggagagatagctcagcaattaaaagcacttaactgcagaggacccaagtttcattccc 45

                                                   
Query: 416 aggtgtaggcataatgtttctatgcctataaaaaataata 455
           || ||||||||||||||||||||||||||||||| |||||
Sbjct: 44  ag-tgtaggcataatgtttctatgcctataaaaa-taata 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 857
Length adjustment: 10
Effective length of query: 445
Effective length of database: 847
Effective search space:   376915
Effective search space used:   376915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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