Query= MSMg01no408_p09.b1 MSMg01no408_p09.b1 CHROMAT_FILE:
MSMg01no408_p09.b1 PHD_FILE: MSMg01no408_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:08 2005
(514 letters)
>mm_chr11_89019386_89020297
Length = 912
Score = 924 bits (478), Expect = 0.0
Identities = 502/510 (98%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcattctctcgaattaaagatgagacctgctcttttgtagacactcagaagga 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcattc-ctagaattaaagatgagacctgctcttttgtagacactcagaagga 263
Query: 65 caccgaattcctgcggccgtggaaagctggatggcctatggttgagcagcccgagtttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caccgaattcctgcggccgtggaaagctggatggcctatggttgagcagcccgagtttcc 323
Query: 125 ggagggaagtatttgcagggcatcttcctgggtcacgccttttccccagacatttttccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagggaagtatttgcagggcatcttcctgggtcacgccttttccccagacatttttccc 383
Query: 185 aaccaagtctgacttgcccaaaccccgagctgttttcaggatctcggtttgatgaccttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaccaagtctgacttgcccaaaccccgagctgttttcaggatctcggtttgatgaccttt 443
Query: 245 ccttcctgctgtaaccatggcctagagactgggtacatacactcaagtctggctgggcca 304
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 444 ccttcctgctgtaaccatggcctagagacaggggacatacactcaagtctggctgggcca 503
Query: 305 ctgtgacaccacttactgtaaggcttccagcaactcatctcatttcttggagcctcaggt 364
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ctgtgacatcacttactgtaaggcttcca-caactcatctcatttcttggagcctcaggt 562
Query: 365 cccggagagatccacacagagaggatgggggaaaagcgattccagctcccgcgtacttca 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 cccggagagatccacacagagaggatggggaaaaagcgattccagctcccgcgtacttca 622
Query: 425 cacagctcagcctgggagggagctgggaggttctggggttgtctttgctatcatgagtat 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 623 cacagctcagcctgggagggagctgggaggttctggggttgtctttgctatcatgagttt 682
Query: 485 cgttccgactttgctaaagtttcatcttgg 514
||||||||||||||||||||||||||||||
Sbjct: 683 cgttccgactttgctaaagtttcatcttgg 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space: 454608
Effective search space used: 454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_p09.g1 MSMg01no408_p09.g1 CHROMAT_FILE:
MSMg01no408_p09.g1 PHD_FILE: MSMg01no408_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:08 2005
(436 letters)
>mm_chr11_89222330_89223165
Length = 836
Score = 843 bits (436), Expect = 0.0
Identities = 436/436 (100%)
Strand = Plus / Minus
Query: 1 caggctgctccactgggagaagctttggagattagctgccacaaagagggtgtacagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 caggctgctccactgggagaagctttggagattagctgccacaaagagggtgtacagaag 577
Query: 61 acgggattgtcatctgtgaggagcgaggaagatttccaagaagacagttttggtctgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acgggattgtcatctgtgaggagcgaggaagatttccaagaagacagttttggtctgaga 517
Query: 121 gctgagagagaaaacaggagttaatacagaaaagatgcctgtgctagactgttctgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gctgagagagaaaacaggagttaatacagaaaagatgcctgtgctagactgttctgtgtg 457
Query: 181 tagtgtgtgcctgtatgcatgtttgtgcattcgtgcgtgtgtaggtgcaggtggaggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagtgtgtgcctgtatgcatgtttgtgcattcgtgcgtgtgtaggtgcaggtggaggtca 397
Query: 241 gaggtcaatgcacgtacaaaggccatggaatagcaagaagcaccgtatattcaaatacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaggtcaatgcacgtacaaaggccatggaatagcaagaagcaccgtatattcaaatacag 337
Query: 301 agaggcagcgtggacttcagatgtgcaaacgctaaggcaaaccgtgagtaaagagaggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agaggcagcgtggacttcagatgtgcaaacgctaaggcaaaccgtgagtaaagagaggag 277
Query: 361 agactaggtgggtgccagttctgaaaaatgagctacttgctattttatttttcctttatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agactaggtgggtgccagttctgaaaaatgagctacttgctattttatttttcctttatc 217
Query: 421 ttaatagaaatacttt 436
||||||||||||||||
Sbjct: 216 ttaatagaaatacttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
