Query= MSMg01no409_i12.b1 MSMg01no409_i12.b1 CHROMAT_FILE:
MSMg01no409_i12.b1 PHD_FILE: MSMg01no409_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:55 2005
(546 letters)
>mm_chr11_120948330_120949277
Length = 948
Score = 971 bits (502), Expect = 0.0
Identities = 533/544 (97%), Gaps = 2/544 (0%)
Strand = Plus / Plus
Query: 5 gaattcactttcttttctcttacccaggacccctgcccagggaatgccctcccacattaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttctgcactcttacccaggacccctgcccagggaatgccctcccacattaa 264
Query: 65 ttaacataattaagataattactgattctcactggccttcttccaggtggttctaggtta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaacataattaagataattactgattctcactggccttcttccaggtggttctaggtta 324
Query: 125 tatgaagttgacaatgaaaaccggccatcacagtcaccctaggtttacagaagactagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgaagttgacaatgaaaaccggccatcacagtcaccctaggtttacagaagactagtc 384
Query: 185 attttgaactatctaggggacaccaagatagtatcgatttaatattatttcatagttaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttgaactatctaggggacaccaagatagtatcgatttaatattatttcatagttaac 444
Query: 245 acaaattaaaataaacgtcttctctattctcttgtttttctgagttctttatttccgttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 acaaattaaaataaacgtcttctctattctcttgtttttctgagttctttatttctgttt 504
Query: 305 ttaacttgttaccaaagacttaaggttccctggatgtggcagaaacctaaatagttcaac 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 ttaacttgttaccaaagacttaaggttccctgggtgtggcagaaacctaaatagttcaac 564
Query: 365 agaacccagattttcccaaaagaagccccagagtggcctattccactccccccc--gccc 422
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 565 agaacccagattttcccaaaagaagccccagagtggcctattccacccccccccccgccc 624
Query: 423 ccatcttgttgacaaaggctaaaacatcagacaggtagcagactgtaggtgaagggtgtg 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 ccatcttgttgacaaaggctaaaacatcagacaggtagcagactgtaggtgaagggcgtg 684
Query: 483 accacactgatattttcagtgagctctggcaggactgggagctagttcagtaggctgagt 542
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 685 accacactgatattttcagtgaactttggcaggactgggagctagttcagtaggctgagt 744
Query: 543 agta 546
||||
Sbjct: 745 agta 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space: 502768
Effective search space used: 502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_i12.g1 MSMg01no409_i12.g1 CHROMAT_FILE:
MSMg01no409_i12.g1 PHD_FILE: MSMg01no409_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:55 2005
(393 letters)
>mm_chr11_121059396_121060188
Length = 793
Score = 698 bits (361), Expect = 0.0
Identities = 385/393 (97%)
Strand = Plus / Minus
Query: 1 cttttatgctgtccatttgagtttggggagctatttgctaaaggactgtcagtaaatggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cttttatgctgtccatttgagtttggggagctatttgctaaaggactgtcagtaaatggt 534
Query: 61 ttgtctcctcctccttatccagcacgaccttgagagtccccatgtaatagacttcatacc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 533 ttgtctcctcctccttatccagcacgaccttgagagtccccgtgtaatagacttcatacc 474
Query: 121 tttaagttcagtagacgttaggcctatgttgtatctatgccttagctaagtggttgtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tttaagttcagtagacgttaggcctatgttgtatctatgccttagctaagtggttgtaga 414
Query: 181 attaagaaaaggggcctgctatctgttactgctggccatacatggggtaaaatgatccct 240
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aataagaaaaggggcctgatatctgttactgctggccatacatggggtaaaatgatccct 354
Query: 241 gttggtgtttgttttcttcctgagacacagggaaagactcagagttggacagttaaggtc 300
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gttggtgcctgctttcttcctgagacacagggaaagactcagagttggacagttaaggtc 294
Query: 301 agaaaacattcggtagtttcttaaaggttactggtgtgtagttctatatgaaatgtttaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agaaaacattcggcagtttcttaaaggttactggtgtgtagttctatatgaaatgtttaa 234
Query: 361 gcgggagcccatgaacatgcacctgtggccagt 393
|||||||||||||||||||||||||||||||||
Sbjct: 233 gcgggagcccatgaacatgcacctgtggccagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
