BAC Information

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BAC

Clone NameMSMg01-409L12
Chromosome11 (Build37)
Map Location 20,207,771 - 20,208,268
singlet/doubletsinglet
Overlap geneSlc1a4
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544
Downstream geneLOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1, Vps54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409L12.T7 (MSMg01no409_l12.b1)MSMg01-409L12.TJ (MSMg01no409_l12.g1)
ACCAG507137AG507138
length777771
length of high quality
(start - end)
477 (48 - 524)498 (77 - 574)
definitionCHROMAT_FILE: MSMg01no409_l12.b1 PHD_FILE: MSMg01no409_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:11 2005CHROMAT_FILE: MSMg01no409_l12.g1 PHD_FILE: MSMg01no409_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGGGTCTCGTATGTAGAAAAAGAGTGTCTTGGGTGTTGATA
GATAAAATGATTGGTCTGTAATCCTAGCATACGTGTCTGACAAGACCAAT
ATGGGCAGCCCCCATATTCATCTGGCCATTTTCTATAATAATCTCTTGTC
TGGTCAAAGAGAAATCAAGTATAGAGATCATAATGTTTAGATGGGATAAT
AGATATAGGGATGATAGCAATTTGGATTGGTTCCGGGCATCCAGCTATGG
AGCAGTTTCCTGACCCTATTTGTTTTATTGTTTGTTATCTGTGGGGGCTT
CTTGGACTTCGAATCTCCAGATGTAAGGGCTACCCTGGATGGAAATGAAC
AGCAGGGGGAGGACGAGAGACCCATGTCTAATCCAGTGAGGTCAAGCTCG
GCTGCCAGAGTGGAGTCTCATTTTCTAGGATTGGGGACAAGATGGATGGT
TTCAATGTTTTCCAGAACTTAACAGAGCACAGTCCTGTTAGGGTGGATGT
GTATGAAGAAGAGTCATTTCTGGTTGGACGAATGAAAAGGCTTGAGGTGA
GACACATGGACCCCATGGAACAATCCCTGGGAGTTATTCGCGTTACGGGC
CCCGGAGACTTTTTTTTTTTTTACTCGCCCTTTCTGAGAATAAAAGGGCA
CTCCCCATTACTGGCGGTTGAAGCCAAAGACTTTACACCTTTAGTTAGAC
ACTGATACCATCAGCTTCCTTCTCTGG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGCCCACCTTTACAAACGA
GACACTGAGCATTGGATCTTTTTTCAAAGGAAATCGCAGACACACACACA
TTGAAGTTTTAAGCCAGGCCTAACAATGTAGAGAAGAGTAACGGGCTCAC
AGAATGGTGAAAATCTGTCCTGCGTTCAGGTCTACGTTGTTGAGCTGGGC
AATGAACACTGCAGCCACACACTGGAAGATGGCTGCTCCATCCATGTTGA
CCGTGGCCCCAATGGGGAGGATGAATCTGCTGATCCTCTTGTCTACACCA
TTGTTCTCCTCAATGCACTTCATCATAGACGGAAGGGTTGCTGAGCTAGA
GATGGGGAGGGAAGCAACCAGGCATGGAAATGGTCCCCAGCCAGGTGAAC
ACCAGAACACATCGGTATGGCGGCTCAGCCAGTGTCCTGCTGCCTTCCCT
CCAAATAGGGAAGCCAGCTAGGTCTCTTTCANAGTTGTCAGTGTAACTTC
AAGTCCCACAGGACTCAAACATGACTTCCGGGATTCACTTGCTACATTAC
TCGAGGGGATTCCCCTAAAGGCCACATCTTGGCTCAGGAACAAGTGGTCC
CAAGAAAAACACTGTGGTTCCCCTCACTCTGGGACCATTCGGGTGGGGTT
CCAAAGCCACCTCCCTGGAAAAAGTTTGCATAATCTGTCTCACAATTGGG
GGGGTAGTCTCATCGAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_l12.g1 MSMg01no409_l12.g1 CHROMAT_FILE:
MSMg01no409_l12.g1 PHD_FILE: MSMg01no409_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:11 2005
         (498 letters)



>mm_chr11_20207571_20208468
          Length = 898

 Score =  888 bits (459), Expect = 0.0
 Identities = 488/498 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccagcccacctttacaaacgagacactgagcattggatcttttttcaaaggaaatcg 60
           |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaccagctcacctttacagaggagacactgagcattggatcttttttcaaaggaaatcg 260

                                                                       
Query: 61  cagacacacacacattgaagttttaagccaggcctaacaatgtagagaagagtaacgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cagacacacacacattgaagttttaagccaggcctaacaatgtagggaagagtaacgggc 320

                                                                       
Query: 121 tcacagaatggtgaaaatctgtcctgcgttcaggtctacgttgttgagctgggcaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacagaatggtgaaaatctgtcctgcgttcaggtctacgttgttgagctgggcaatgaa 380

                                                                       
Query: 181 cactgcagccacacactggaagatggctgctccatccatgttgaccgtggccccaatggg 240
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cactgcggccacacactggaagatggctgctccgtccatgttgaccgtggccccaatggg 440

                                                                       
Query: 241 gaggatgaatctgctgatcctcttgtctacaccattgttctcctcaatgcacttcatcat 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggatgaacctgctgatcctcttgtctacaccattgttctcctcaatgcacttcatcat 500

                                                                       
Query: 301 agacggaagggttgctgagctagagatggggagggaagcaaccaggcatggaaatggtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacggaagggttgctgagctagagatggggagggaagcaaccaggcatggaaatggtcc 560

                                                                       
Query: 361 ccagccaggtgaacaccagaacacatcggtatggcggctcagccagtgtcctgctgcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagccaggtgaacaccagaacacatcggtatggcggctcagccagtgtcctgctgcctt 620

                                                                       
Query: 421 ccctccaaatagggaagccagctaggtctctttcanagttgtcagtgtaacttcaagtcc 480
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ccctccaaatagggaagctagctaggtctctttcaaagttgtcagtgtaacttcaagtcc 680

                             
Query: 481 cacaggactcaaacatga 498
           ||| ||||||||||||||
Sbjct: 681 cacgggactcaaacatga 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)