Query= MSMg01no409_n19.b1 MSMg01no409_n19.b1 CHROMAT_FILE:
MSMg01no409_n19.b1 PHD_FILE: MSMg01no409_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:22 2005
(466 letters)
>mm_chr11_69955729_69956594
Length = 866
Score = 857 bits (443), Expect = 0.0
Identities = 459/465 (98%), Gaps = 5/465 (1%)
Strand = Plus / Plus
Query: 5 gaattcattttggatattacaatacctcaacaatgaggattcctaaacaatacctgatcg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttggatattacaatacctcaacaatgaggattcctaaacaatacctgatcg 264
Query: 65 atgacaatatcaataaacatgctaactcaggagtaggaaatctcatgaggacctacccta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgacaatatcaataaacatgctaactcaggagtaggaaatctcatgaggacctacccta 324
Query: 125 gacaaagaaacacagtctgctaaagtgtactgatggaagattagcctgtcccagggatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacaaagaaacacagtctgctaaagtgtactgatggaagattagcctgtcccagggatga 384
Query: 185 acctctaattgattatccaattccaagtggtcatatatacccaagccgcactaagtaaac 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 acctctaattgattatccaattccaagtggtcatatatacccaagccgcactaaataaac 444
Query: 245 ttagcaggtatatttatatatat--gcacaaaaaatgtaacaataatagccaaagaaaaa 302
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 445 ttagcaggtatatttatatatatatgcacaaaaa-tgtaacaataatagccaaagaaaaa 503
Query: 303 gaggccatcaatttcag-agggagtgggggccacatgggagaaaatgggggaggaaagca 361
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaggccatcaattt-aggagggagtgggggccacatgggagaaaatgggggaggaaagca 562
Query: 362 aagagggggagtgatataattatattttaattttaaaacttttaataaaaaggaacataa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagagggggagtgatataattatattttaattttaaaacttttaataaaaaggaacataa 622
Query: 422 gataaaaaaaaaacccttttaactaaactgatcaaaaagaaagtg 466
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gataaaaaaaaaacccttttaactaaactgatcaaaaagaaagtg 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_n19.g1 MSMg01no409_n19.g1 CHROMAT_FILE:
MSMg01no409_n19.g1 PHD_FILE: MSMg01no409_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:23 2005
(410 letters)
>mm_chr11_70164092_70164904
Length = 813
Score = 752 bits (389), Expect = 0.0
Identities = 406/413 (98%), Gaps = 3/413 (0%)
Strand = Plus / Minus
Query: 1 ccatgggttctctgccttggtggggtctcccatctgacccgttcctcactgggcctctgg 60
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 ccatgggttctctgccttagtggggtctcccatttgacccgttcctcactgggcctctgg 554
Query: 61 cagagtttccagaattccccttcctctagtcctcccc---ccccccggggaggaaggagt 117
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 553 cagagtttccagaattccccttcctctagtcctccccccaccccccggggaggaaggagt 494
Query: 118 gtaccttcccatcgtccatcgtccatccttaaccctctcactcttggttgaggtgacaac 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtactttcccatcgtccatcgtccatccttaaccctctcactcttggttgaggtgacaac 434
Query: 178 cctgagtggtgtcatggagcctcttttcatcacttttcctgtggcccagtggaagcagaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctgagtggtgtcatggagcctcttttcatcacttttcctgtggcccagtggaagcagaa 374
Query: 238 ctcagcctgagcaccccattctgcgcccctgtgcttatctgcaggaggcagaattcaagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctcagcctgagcaccccattctgcgcccctgtgcttatctgcaggaggcagaattcaagg 314
Query: 298 tggatgtgtcagaataccttgggccactgctgttcgtgagagtgcagaaatggcattatc 357
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 313 tggatgtgtcagaataccttgggccactgctgtttgtgagagtgcagaaatggcattatc 254
Query: 358 tcaaagaggacgcctggttctgcaactggatttctgtgaagggccccggagac 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcaaagaggacgcctggttctgcaactggatttctgtgaagggccccggagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 813
Length adjustment: 9
Effective length of query: 401
Effective length of database: 804
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
