Query= MSMg01no410_e11.b1 MSMg01no410_e11.b1 CHROMAT_FILE:
MSMg01no410_e11.b1 PHD_FILE: MSMg01no410_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:58 2005
(242 letters)
>mm_chr11_80969339_80969981
Length = 643
Score = 437 bits (226), Expect = e-127
Identities = 238/244 (97%), Gaps = 5/244 (2%)
Strand = Plus / Plus
Query: 1 aggtggtagcctagaggcctggaagcagctactgttaaaggagctaaaacaagcatgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtggtagcctagaggcctggaagcagctactgttaaaggagctaaaacaagcatgtga 260
Query: 61 catctcccagcatccttactctggagtggaactatgctctgttttgtcagaagtcattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctcccagcatccttactctggagtggaactatgctctgttttgtcagaagtcattct 320
Query: 121 ggttgattctgcggttatgggcttttctttcctggctgtatacttcttgaggtattt--- 177
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttgattctgcggttataggcttttctttcctggctgtatacttcttgaggtat--aca 378
Query: 178 catgccagtgagggctgatcaattgtcaccgttaccccgtctttccctgtccattctcca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 catgccagtgagggctgatcaattgtcaccgttaccccgtctttccctgtccattctcca 438
Query: 238 tatg 241
||||
Sbjct: 439 tatg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space: 147722
Effective search space used: 147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_e11.g1 MSMg01no410_e11.g1 CHROMAT_FILE:
MSMg01no410_e11.g1 PHD_FILE: MSMg01no410_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:58 2005
(431 letters)
>mm_chr11_81151033_81151868
Length = 836
Score = 743 bits (384), Expect = 0.0
Identities = 420/434 (96%), Gaps = 5/434 (1%)
Strand = Plus / Minus
Query: 3 agggagaggctgggctaaggagtagaaacatagggtcctatgagcatcaaagatcaagag 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agggagaggctgggctaaggagtagaaacatagggtcctatgagcatcaaagatcaagaa 577
Query: 63 agaagaccccgcatagtcccagggagcattgtctgtgccaaagggttcca---ac--cac 117
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct: 576 agaagaccccgcatagtcccagggagcattgtctgtgctaaagggttccaagcacatcac 517
Query: 118 atggtgtttgtggacataaaaagtgtctagtccctaagaagaacatcaaaggatcccagt 177
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 516 atggtgtttgtggacataaaaagtgtctagtccctaagaagaacatcaaagaatcccagt 457
Query: 178 gcagaggaacactcagcaaggcattcgagtgttccctcctttctgaggtcacagcagata 237
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 456 gcagaggaacactcagcaaggcattcgagtgttccgtccagtctgaggtcacagcagata 397
Query: 238 aacttagctagttactttcaactttaagacatacaacacctttctaatcagatccaaaca 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aacttagctagctactttcaactttaagacatacaacacctttctaatcagatccaaaca 337
Query: 298 agggcaggcaagctttcccagaggctggagcccacggtgccagaaaaccaaattcagaac 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 336 agggcaggcaagctttcccagaggctggagcccacggggccagaaaaccaaattcagaac 277
Query: 358 atgcttgtaaacaaagttaaatcccttcacttaagtcttctccgtctctgtgtagttctc 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgcttgtaaacaaagctaaatcccttcacttaagtcttctccgtctctgtgtagttctc 217
Query: 418 ttccccttaagaaa 431
||||||||||||||
Sbjct: 216 ttccccttaagaaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 836
Length adjustment: 9
Effective length of query: 422
Effective length of database: 827
Effective search space: 348994
Effective search space used: 348994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
