BAC Information

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BAC

Clone NameMSMg01-412C16
Chromosome11 (Build37)
Map Location 86,649,701 - 86,649,965
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412C16.T7 (MSMg01no412_c16.b1)MSMg01-412C16.TJ (MSMg01no412_c16.g1)
ACCAG509005AG509006
length747806
length of high quality
(start - end)
273 (47 - 319)58 (247 - 304)
definitionCHROMAT_FILE: MSMg01no412_c16.b1 PHD_FILE: MSMg01no412_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:26 2005CHROMAT_FILE: MSMg01no412_c16.g1 PHD_FILE: MSMg01no412_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTATGTTAGCCAGGCTGGCCTCACACTCTCAGAGATCCACCTG
CCTTTGCCTCCTTAGCTGCCACTATATTCTTTGAGGCAGGGTCACTGGCC
ACTGAAGTTTCCAGATCTGCATGCAGGAGCGCCTGGCTTTTGCATTTAAT
GAAGACTTTACCAACAGAGCTATCTCCCCACCCCCAGGGCCATTCCCCCT
CCACTTTCTCAGTCAGGTCCTAGTCTCGGAATTGTACAAAACCCAGGTGA
CAAAGTATAACTAAACGTGTTTTTATGAGGTGCTCCCTGTTTCTCTACAG
TTGTTGAGCAACTCCTTAAGTTGCTGCTTCAGGAATGCTCTTGGCCTAAT
GGCAACACCCTTTCTACAATAGGGGCAGAGGTGAGAGGGAGCTACTGCCC
TCCAGTGGCTCCTATGGTAACTACATCAGGGACTGTATAGCTCATGCAGG
GCCATCAGGAAAGACCAGGGTAGAACAGAGCAGAGGAAAGTATATTTGAC
TGATCGAAAGAACTAGCATGATTTCAGGCATTACTGCTAATGTGACCTAG
TAAACTCAGCTCTGTAAAGGACAGAAAATATATAGATTATATTGAGCTGT
AGGTTTTTCTTAATTACCTACTTCCTTTTGTAGCCCGACAACGCATACTG
TCAGTGCTAGTATTCCTATTGCACTTATATGAACCCCCATCCCTCAC
TCGATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAAGATGTAGCCTTCTCGACAGT
CTGTTTTACGGTAACACTTCATTACCACCGTTCCCCAGCTGAAAAGTTCT
GAATCCATGCAGTTGAATCCATCTCAACAGTCTGTGTTGCGCGAACACTT
TATTACCACCGTTCTCCAGCTGAAGAGTTCTGAATCCAGGCTGGATCCTT
CTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAATTCT
GGTTCCGGAATGATTGTTTTTCCTTGCCCCTGTGATGATAACCGCCCCAA
GTTTTCTCGTCCCTTCATTTCTCATCCCATCTTTTCTCGACCCGGTTCTT
CTTGTCCCAGTCCTTCTTGCTCCTCTTTTTTTTCCTTTGCTTTCCTCTCG
CCCCGCTTTTCCTCGCCCTGCCTCTTCCCCCCCCCTCCTTACCCTTTTTT
TTTCCTCATTCTTCTATTATTACTTACCTCCCACTTATCTCCCCTTTTCT
TTTACCTCTATTTTCTTATTCTCCTCCACCCAACATATATATTATTAGCT
ATACCGATCCTCCCCCCTCTTCTTTTTTCCCCCCTTCTTCCTTCTCTCTT
TATCCCCCTTTTTTTTTTATCCCTCTTCTTTTATTCTTCCCTTGCCACTC
TTTGTACTCTTATCTTTTATACCCCACGCCCCCCTTTTATTTCCGACCCC
CATATATCCCCCCACATTTCTCAACATTAACATTATTTATCCCTCCCCTA
TTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_c16.b1 MSMg01no412_c16.b1 CHROMAT_FILE:
MSMg01no412_c16.b1 PHD_FILE: MSMg01no412_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:26 2005
         (273 letters)



>mm_chr11_86649497_86650169
          Length = 673

 Score =  466 bits (241), Expect = e-136
 Identities = 259/265 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatgttagccaggctggcctcacactctcagagatccacctgcctttgcctc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatgtaagccaggctggcctcacactctcagagatccacctgcctttgcctc 264

                                                                       
Query: 65  cttagctgccactatattctttgaggcagggtcactggccactgaagtttccagatctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttagctgccactatattctttgaggcagggtcactggccactgaagtttccagatctgc 324

                                                                       
Query: 125 atgcaggagcgcctggcttttgcatttaatgaagactttaccaacagagctatctcccca 184
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcaggagcgcctggatattgcatttaatgaagactttaccaacagagctatctcccca 384

                                                                       
Query: 185 cccccagggccattccccctccactttctcagtcaggtcctagtctcggaattgtacaaa 244
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 385 cccccagggccattccccctccactttctcagtcaggtcctaggcttggaattgtacaaa 444

                                    
Query: 245 acccaggtgacaaagtataactaaa 269
           ||||||||||||| |||||||||||
Sbjct: 445 acccaggtgacaacgtataactaaa 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)