BAC Information

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BAC

Clone NameMSMg01-413N17
Chromosome11 (Build37)
Map Location 70,212,802 - 70,408,390
singlet/doubletdoublet
Overlap genePelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1
Upstream geneJmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466
Downstream geneChrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413N17.T7 (MSMg01no413_n17.b1)MSMg01-413N17.TJ (MSMg01no413_n17.g1)
ACCAG510291AG510292
length741764
length of high quality
(start - end)		593 (28 - 620)247 (60 - 306)
definitionCHROMAT_FILE: MSMg01no413_n17.b1 PHD_FILE: MSMg01no413_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:40 2005CHROMAT_FILE: MSMg01no413_n17.g1 PHD_FILE: MSMg01no413_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,212,802 - 70,213,386)(70,408,144 - 70,408,390)
sequence
CCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTAACTCTAT
ACCGTAATGGTGCCATTGTAAATATGTTAGACTTGCTCCTACCAGAAGCA
GGATTCAGCCACCCCGAGTTTCCAGGTCTCCCTTCCGTTCTAGTTCCTTG
ATGTGAGCAAGCCTGATACTTGCTTTCCATAACTTCTTACTAGAGACCAG
CTCCCTAGATCTAGCTTGCTTGACCCAAGACCCTGCTGACCTCACAAGCA
GATGGAGCAGATCTGCCACAGTGACTGATCATCTGCAACTTCCACTATGC
AGAAGTTCTAGGGAATCAAACTCAAGTCATCGGGCTTACGCCTTATCTAC
TAAGCATCTCGCCAGCCCTATCAATACTTTATAAACTGTTTTGGAACACT
TTAATTGAAACAGAACTTAATACAAACAGAAAGTTTGTGATTCCAGATAT
TTTTGTTTTATAAAATTAAATTTTAACTCTGAGGGAGCCAAGGATAGAAC
TCAGTGATTGGACTGAGTTCACTCCACAGTACAAAACAAAAAACAGAAAT
CCTGTCCTGCCCACTTACAACTTTTTGTTTTATTTTGTTTTGGTTTTCGA
GACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAATTCACTCTGTATA
CCAGGCTGGCCTTAAACTCAGAAATCTGCTTGCCATGTGCTTCCGTGTGC
TGGGACTAAAGGTGTGTTGCCGCACACTCAGTTTCACTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGAATATCCAATTGGCTCTAGAGGAGACAAACCTTGGGGGT
TTTGGAGGCTGGGTAAGTTTCCAACCACAGATAAGGAAAGGAATAAAGAG
TGCCTGCATGCCCTGCTGAGCAGCAGTGTGCGGTTAAGACACTAAGTTTG
AGAAGTCAGGAAGCGTGGGAGCACACGTCTATCAAGCAGTTCAAAACAAG
GGTCTGATGAAGTGGCAGAGACACTCAGGAGTGAGAGTTGGTGACAAAGT
ATGAGGAGATATGAGCACAGGAAGGTAGGCCAAAAGAAGCCAAGGCTGCC
CTGAGGACCACAGGACACTGGAGGATGGGCAGTTGTGGAGGATGAGGCGG
CAAGACAGAGCAGTCAGAGACACTGCAGAGACCCGATGCCTCAGCCTCTA
AGTGACTAGGGAGAAGCTCCACGGGAACTGCATTGTGGGAGCGGAAAGCG
GAGAGTGGGGCTGGAGGAAGCGGGAGGGCTGAGGAAGTCAGGGCTCGGGA
GCACCCTTCCAGTAACAGCCTGAGAGCGGAAGAAGGAAATCAAATGACAC
CTTCAAAAGGCCGAGGTTCAGACCAGGTTCTCAGAGTAGACAGATCTCTC
ATGTCCTTGGATAGGAAAAAGAACAATTGGGAGACAAAGGAATTGGAGTT
AAATAAACTTTTTTTTGTTGTGTGGGGGCCCGAAAGCTTTTCTCGTGGGG
GCGCCCCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_n17.b1 MSMg01no413_n17.b1 CHROMAT_FILE:
MSMg01no413_n17.b1 PHD_FILE: MSMg01no413_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:40 2005
         (593 letters)



>mm_chr11_70212594_70213586
          Length = 993

 Score = 1116 bits (577), Expect = 0.0
 Identities = 583/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctaactctataccgtaatggtgccattgtaaatatgttagacttgctcctaccag 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctaactctataccgtaatggtgccattgtaaatatgttagacttgctcctaccag 268

                                                                       
Query: 69  aagcaggattcagccaccccgagtttccaggtctcccttccgttctagttccttgatgtg 128
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagcagggttcagccaccccgagtttccaggtctcccttccgttctagttccttgatgtg 328

                                                                       
Query: 129 agcaagcctgatacttgctttccataacttcttactagagaccagctccctagatctagc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcaagcctgatacttgctttccataacttcttactagagaccagctccctagatctagc 388

                                                                       
Query: 189 ttgcttgacccaagaccctgctgacctcacaagcagatggagcagatctgccacagtgac 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttgcttgacccaagaccctgctgacctcacaagcagatggagcagatctgccacagtgac 448

                                                                       
Query: 249 tgatcatctgcaacttccactatgcagaagttctagggaatcaaactcaagtcatcgggc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgatcatctgcaacttccactatgcagaagttctagggaatcaaactcaagtcatcgggc 508

                                                                       
Query: 309 ttacgccttatctactaagcatctcgccagccctatcaatactttataaactgttttgga 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttacgccttatctactaagcatctcgccagccctatcaatactttataaactgttttgga 568

                                                                       
Query: 369 acactttaattgaaacagaacttaatacaaacagaaagtttgtgattccagatatttttg 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acactttaattgaaacagaacttaatacaaacagaaagtttgtgattccagatatttttg 628

                                                                       
Query: 429 ttttataaaattaaattttaactctgagggagccaaggatagaactcagtgattggactg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttttataaaattaaattttaactctgagggagccaaggatagaactcagtgattggactg 688

                                                                       
Query: 489 agttcactccacagtacaaaacaaaaaacagaaatcctgtcctgcccacttacaactttt 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agttcactccacagtacaaaacaaaaaacagaaatcctgtcctgcccacttacaactttt 748

                                                        
Query: 549 tgttttattttgttttggttttcgagacagggtttctctgtgtag 593
           ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 749 tgttttattttgttttgtttttcgagacagggtttctctgtgtag 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_n17.g1 MSMg01no413_n17.g1 CHROMAT_FILE:
MSMg01no413_n17.g1 PHD_FILE: MSMg01no413_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:40 2005
         (247 letters)



>mm_chr11_70407944_70408590
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatatccaattggctctagaggagacaaaccttgggggttttggaggctgggtaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agaatatccaattggctctagaggagacaaaccttgggggttttggaggctgggtaagtt 388

                                                                       
Query: 61  tccaaccacagataaggaaaggaataaagagtgcctgcatgccctgctgagcagcagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccaaccacagataaggaaaggaataaagagtgcctgcatgccctgctgagcagcagtgt 328

                                                                       
Query: 121 gcggttaagacactaagtttgagaagtcaggaagcgtgggagcacacgtctatcaagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcggttaagacactaagtttgagaagtcaggaagcgtgggagcacacgtctatcaagcag 268

                                                                       
Query: 181 ttcaaaacaagggtctgatgaagtggcagagacactcaggagtgagagttggtgacaaag 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 ttcaaaacaagggtctgatgaagtggcagagacactcgggagtgagagttggtgacaaag 208

                  
Query: 241 tatgagg 247
           |||||||
Sbjct: 207 tatgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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