Query= MSMg01no414_f04.b1 MSMg01no414_f04.b1 CHROMAT_FILE:
MSMg01no414_f04.b1 PHD_FILE: MSMg01no414_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:19 2005
(623 letters)
>mm_chr11_90869311_90870339
Length = 1029
Score = 1154 bits (597), Expect = 0.0
Identities = 616/625 (98%), Gaps = 6/625 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgtggaggtcatcatggggtggcagaatatggagcaaaactgtagccatcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtggaggtcatcatggggtggcagaatatggagcaaaactgtagccatcatt 264
Query: 65 cctgttggcttaatgatgaattagaatatctagcctacccaatctcttgtaaaggacctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgttggcttaatgatgaattagaatatctagcctacccaatctcttgtaaaggacctg 324
Query: 125 ctgtctttttaacagctccacttttttttt-ccatcaagcatagtcagttttgtttcccg 183
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 ctatctttttaacagctccacttttttttttccatcaagcatagtcagttttgtttccca 384
Query: 184 tcattcttagatagcaaatttattccaccaaagacataagattcaaggttttgatcacta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcattcttagatagcaaatttattccaccaaagacataagattcaaggttttgatcacta 444
Query: 244 gaggtctctaccaagtgtagataatgtgtacccactagaaatgtttcctgtataattata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggtctctaccaagtgtagataatgtgtacccactagaaatgtttcctgtataattata 504
Query: 304 tactgaaaataaataccaatgcaaaatgagcatgaattattttcataaaataagtatgac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactgaaaataaataccaatgcaaaatgagcatgaattattttcataaaataagtatgac 564
Query: 364 atgtttgtgcatatgttgacattttgaatatttaaaatatattctatcacgtaaccctcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtttgtgcatatgttgacattttgaatatttaaaatatattctatcacgtaaccctcc 624
Query: 424 ctaaacagttctgaattaaacagcataaacattattaaaaccatttgtaagtggtgaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaaacagttctgaattaaacagcataaacattattaaaaccatttgtaagtggtgaatg 684
Query: 484 ggaagtaatgaagggttcaagagactaagtgatagatttggaacacaacaaagctctagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaagtaatgaagggttcaagagactaagtgatagatttggaacacaacaaagctctagt 744
Query: 544 tgtaagagtaatgggcctcatgcatatgcattatattgcttgttcatacatt-----cct 598
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 745 tgtaagagtaatgggtctcatgcatatgcattatattgcttgttcatacatttctttcct 804
Query: 599 ttcctggcataaggttttatcttta 623
|||||||||||||||||||||||||
Sbjct: 805 ttcctggcataaggttttatcttta 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1029
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1019
Effective search space: 624647
Effective search space used: 624647
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_f04.g1 MSMg01no414_f04.g1 CHROMAT_FILE:
MSMg01no414_f04.g1 PHD_FILE: MSMg01no414_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:19 2005
(441 letters)
>mm_chr11_91003518_91004358
Length = 841
Score = 760 bits (393), Expect = 0.0
Identities = 429/441 (97%)
Strand = Plus / Minus
Query: 1 tatctccctcagtctcaactactggagaatttgaaagtaggcatgagaagcaaatggtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tatctccctcagtctcaactactggagaatttgaaagtaggcatgagaagcaaatggtta 582
Query: 61 aataaacaagtaaaattcgtataacagaaacaaagaggaagggaaattctagatttaggg 120
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 581 aataaacaattaaaattcgtataacagaaataaagaggaagggaaattctagatttgggg 522
Query: 121 gacacacatctgcctattcctttttctagaaaccctgttgccctcctatacattatcccc 180
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gatacacatccgcctattcctttttctagaaaccctgttgccctcctatacattatcccc 462
Query: 181 aaaagagtgtgtctgcttcttcacacgtagagcttgatcagatcacaggtcacatgagag 240
||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct: 461 aaaagagtgtgtctgcttcttcatacatagagcttgatcagaccacaggtcacatgagag 402
Query: 241 ctgaaaaacgatcagcagaaatggtgagatgtctctgtagcaaacaagtttattggtagt 300
|||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 401 ctgaaaaaagatcagcagaaatggtgagatgtctctgcagcaaacaagtttgttggtagt 342
Query: 301 ggttcccccaatttcttcttcccttctcttgagacaaatgctttgtatagtagggttctg 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 341 ggttcccccaatttcttcttcccttctcttgagacaaatgctttgtatactagggttctg 282
Query: 361 gaacaattacaagtcaaggagaaaagtacaaattactgattctatgtttgggttgttttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaacaattacaagtcaaggagaaaagtacaaattactgattctatgtttgggttgttttg 222
Query: 421 ttttgtttttctgatgaacta 441
|||||||||||||||||||||
Sbjct: 221 ttttgtttttctgatgaacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
