BAC Information

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BAC

Clone NameMSMg01-415H06
Chromosome11 (Build37)
Map Location 15,826,356 - 15,826,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415H06.T7 (MSMg01no415_h06.b1)MSMg01-415H06.TJ (MSMg01no415_h06.g1)
ACCAG511509AG511510
length762748
length of high quality
(start - end)
399 (41 - 439)461 (71 - 531)
definitionCHROMAT_FILE: MSMg01no415_h06.b1 PHD_FILE: MSMg01no415_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:51 2005CHROMAT_FILE: MSMg01no415_h06.g1 PHD_FILE: MSMg01no415_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTCGCTCTGAGCCACATTTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGAGAAAACCAT
TTCTGCCACCAGATTTTTTTTTCTAGAGCATTGGTATTTTGCCTATATAT
ATGCATGTATATCTGTGTGAGGATGTCAGATACTCTGGAAATAAAGTTAA
AGACAATTGTGAGCTGCCATGTTGTAAAAAACAGTCCATGCTCTCAGATG
CTAAGCCATTTCTCTAGCCCCGTTGACATCATTTTCTAGTTGCCTTCAGA
GCTTTGTTTAGCTTTGGGGCCCCATTAGATATCCAATTCCTGTATCGGCA
CATCAATTGTAATTGTTCATTTCCTTAAGCTTTCTTTAGGTTGTCAAGCT
GATGAGACTTCATGGTTGTAGCTTTCCTGTCAATCTGCGGCGTGGAAATA
ATCACCGCAGACCTTTACTCCTCTTATCCTCACTACATTTTTACCCCCTC
TTCCACAATGACACCTCGATGCTCACGCGTTTTTGTTTGTTCCCGCATTC
GATCCTCCCCTTTTTCTATTATACCTCCGTTCCCTAACTACCATCGTTTT
GCCCTTTTCCCTCCCCTTCCCCTTTTTTTTTTTTTCGCCTTATTCTTCTC
TTTCTTTCTCGCCTCCCTTCCCATCCTTCTCTGCTCCTTCTTCCTCTACT
CCTTTCCTCTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGGAAAGTAATCACCAAGAGAATACAAG
AGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAAAACATGGAC
ACAACAATCAAAGAAAATGAAAAATGCAAAAAGACACTGTCTTAGTCAGG
GTTTCTATTCCTGCACAAACATCATGACCATGAAGCAAGTTGGGGAGGAA
AGTGTTTATTCAGCTTACATTTCCATACTGCTGTTGATCACCAAAGGATG
CAGGACTGGAACTTTTTAGGTGGGGAAGCAGGAGCTGATGAACAATCCAT
GGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTC
TCTTATAGAACGAAAACTACCAGCCCAGAGATAGTCCCACCCAAAGGGGG
CTTTCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCCTG
GAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGCTAACTCCAGCTGTG
CTAAGTTGACCCAAAACTATCCAGTACCTTTGTACCCTTGTCAACTTGAT
ACACCAAACTTTCCCCTAGTAAGCCCGTACCGAACCTTATTTTTTTATTT
TCCTACATACTTCGGACTCTTTTGTATAGAAACTTTCCCTCTTTTTATTC
GGTCTTTGCGTCGCCTGTACATATTTCCTTCCTATGCCCCTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_h06.b1 MSMg01no415_h06.b1 CHROMAT_FILE:
MSMg01no415_h06.b1 PHD_FILE: MSMg01no415_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:51 2005
         (399 letters)



>mm_chr11_15825924_15826722
          Length = 799

 Score =  671 bits (347), Expect = 0.0
 Identities = 363/369 (98%), Gaps = 2/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 31  attttttaatggggttatttgattttctggagtccaccttcttgagttctttatatatat 90
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 attttttaatggggttatttgattttctggagtccaccttcttgagttctttatatatat 740

                                                                       
Query: 91  tggatattagagaaaaccatttctgccaccagatttttttttctagagcattggtatttt 150
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 739 tggatattagagaaaaccatttctgccaccaga--tttttttctagagcattggtatttt 682

                                                                       
Query: 151 gcctatatatatgcatgtatatctgtgtgaggatgtcagatactctggaaataaagttaa 210
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 gcctatatatatgcatgtatatctgtgtgaggatgtcagatattctggaaataaagttaa 622

                                                                       
Query: 211 agacaattgtgagctgccatgttgtaaaaaacagtccatgctctcagatgctaagccatt 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agacaattgtgagctgccatgttgtaaaaaacagtccatgctctcagatgctaagccatt 562

                                                                       
Query: 271 tctctagccccgttgacatcattttctagttgccttcagagctttgtttagctttggggc 330
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tctctagcccagttgacatcattttcgagttgccttcagagctttgtttagctttggggc 502

                                                                       
Query: 331 cccattagatatccaattcctgtatcggcacatcaattgtaattgttcatttccttaagc 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 cccattagatatccaattcctgtatcggcacatcaattgtaattgttcatttccttaagt 442

                    
Query: 391 tttctttag 399
           |||||||||
Sbjct: 441 tttctttag 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)