NAAAATAGTCCTACATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACTCGTTATCTAACATCCCCCCCACCTTGTCCCTAACTCTG
AGTGGCATGTCCAGTTTTTGTTTGGGTTGAAATATTCACCTTCAAGGTTT
CTCCAAGATTTGCCTACTTGGCCAAAAACAAACATAAATAAACAAATAAA
CAAACAAATAAATAAGTCATTCTTCCTTCCCTGCCCCCCCCCTCTTTTTC
TCTCTCTCTCTCCTGCTTGGCAGGTGCTGTATGTCATCTATTCATTCTGT
GTCTGTAAGATGAGAAAGGGCTGGGTTAGATTTTGAAAAGTAAAAATAGT
GATCTATCTTCTTTACTCTACCTGACTTTTTCACTCAGACTCCTTACTCC
CCCCTGCTTGATAATAACTCAGCTCATGAACTTCCGCCTTGAGCATCCTT
CCTGGATGACCCTCCACTGGAGAAGTGGGTATTCAGGTCTCCTCCCAGAC
TATCTGGGATGCTGTGGTCAAGTGTGTGAACCATGGGTTTCCACTAAAAT
CCAATATTCCCTCTAACACTCACATTATGGCTTGACCTCTCTGGTCCTTG
ACTGTTCATCTGCAGAGTGGAGAACAATCTCCAACTGTAATGGAAATCAG
GGCATGCGAGATGACTGGCATTGCTCCAACGCTTGGAAAAACACAGCGTA
CTACTTGTAAAGTAACCACGGGGCAAAAG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCACCCGTCTGGTTGTGTTTTCCTA
TAATTCTTTAAGGGATTTTTGTGTTTCCTCTTTAAGGACTTCTGCCTGTT
TATCAGTGTTCTCTTGTATTTCTTTAAGTGAGTTATTAGTGTCCTTCTTA
AAATCCTCTACCAGCATCATGTGATATGATTTAGCTTTTCCGGTGTGTTG
GGGTATCCAGGACTCTCTGTGGTGGGAGTACTGGGTTCTGATGATGCCGA
ATAGTCTTGGTTTCTGTTAGTAAGATTCTTGCATTTGCCTTTCACCAGCT
GGTAATCTCTGGTGTTAGATGTTCTAGTTGTCTCTGGCTGGAGCTTGTTC
CTCCTGTGATTCTGTTAGCCTCTGTCAATACTCCTGGGAGTCCAACTCTC
TCTTGAATGCCAGTGGTCAGAGCACTCTCTGCAGGCAAGCTCTCTTCAGG
CAGGGAAGATAAAGGGCCAAAGGGACCCTGTCCAAGAAGCTCTGTTGCTT
TGTGGCCACGTGCTCACCGTGTGGACTGGTTCTGAAAGAACTGAGAAAAC
AAATGGGAACTCCCCTTGAATCCTGGGGGCAAAAACCTCCCTTGAAGGCA
ATTTTCTTTGGAAGGAAAGGGGGCGAAAAACTGGGTTTCACTTCTTCCCC
CCCTGGGGGAAAAAAAGCCCCCAAAAACCCTCTTCCAAAAAATTCTTT

Query= MSMg01no416_e24.b1 MSMg01no416_e24.b1 CHROMAT_FILE:
MSMg01no416_e24.b1 PHD_FILE: MSMg01no416_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:54 2005
         (566 letters)



>mm_chr11_6927139_6928105
          Length = 967

 Score =  975 bits (504), Expect = 0.0
 Identities = 548/566 (96%), Gaps = 9/566 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactcgttatctaacat--cccccccaccttgtccctaactctgagtggcatgt 62
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 930 gaattccactcgttatctaacatcccccccccaccttgtccctaactctgagtggcatgt 871

                                                                       
Query: 63  ccagtttttgtttgggttgaaatattcaccttcaaggtttctccaagatttgcctacttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 870 ccagtttttgtttgggttgaaatattcaccttcaaggtttctccaagattttcctacttg 811

                                                                       
Query: 123 gccaaaaacaaacataaataaacaaataaacaaacaaataaataagtcattcttccttcc 182
           |||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||
Sbjct: 810 gccaaaaacaaacataaataaacaaataaacaaac----aaataagccattcttccttcc 755

                                                                       
Query: 183 ctgccccccccctctttttctctctctc--tctcctgcttggcaggtgctgtatgtcatc 240
           | | ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 754 ccg-cccccccctctttttctctctctctgtctcctgcttggcaggtgctgtatgtcatc 696

                                                                       
Query: 241 tattcattctgtgtctgtaagatgagaaagggctgggttagattttgaaaagtaaaaata 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tattcattctgtgtctataagatgagaaagggctgggttagattttgaaaagtaaaaata 636

                                                                       
Query: 301 gtgatctatcttctttactctacctgactttttcactcagactccttactcccccctgct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 635 gtgatctatcttctttactctacctgactttttcactcagactccttactccccactgct 576

                                                                       
Query: 361 tgataataactcagctcatgaacttccgccttgagcatccttcctggatgaccctccact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgataataactcagctcatgaacttccgccttgagcatccttcctggatgaccctccact 516

                                                                       
Query: 421 ggagaagtgggtattcaggtctcctcccagactatctgggatgctgtggtcaagtgtgtg 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 ggagaagtgggtattcaggtctcctcccagactagctgggatgctgtggtcaagtgtgtg 456

                                                                       
Query: 481 aaccatgggtttccactaaaatccaatattccctctaacactcacattatggcttgacct 540
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 455 aaccatgggtttccactaaaatccaatatcccctctaacagtcacattatggcttgacct 396

                                     
Query: 541 ctctggtccttgactgttcatctgca 566
           |||||||||||||||||| |||||||
Sbjct: 395 ctctggtccttgactgtttatctgca 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space:   532092
Effective search space used:   532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)