BAC Information

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BAC

Clone NameMSMg01-416L12
Chromosome11 (Build37)
Map Location 58,289,165 - 58,289,686
singlet/doubletsinglet
Overlap genenone
Upstream gene1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30
Downstream geneOlfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416L12.T7 (MSMg01no416_l12.b1)MSMg01-416L12.TJ (MSMg01no416_l12.g1)
ACCAG512469AG512470
length718734
length of high quality
(start - end)		621 (38 - 658)520 (75 - 594)
definitionCHROMAT_FILE: MSMg01no416_l12.b1 PHD_FILE: MSMg01no416_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:24 2005CHROMAT_FILE: MSMg01no416_l12.g1 PHD_FILE: MSMg01no416_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGAGGAATACCGAATGGCAGAAAAGCACCGGAAAAAATGTTCAACATG
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCA
CACGAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAACTGG
ACATGGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCATATATCCA
GAAGATGCCCCAACTGGTAAGAAGGACACAATCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGGCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAAGTAACCCAGTCACAAAGGAACTCGC
ACAATATGTACTCACTTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCAC
ACTTTGGTCTTTGTTCTTCTTGANGTTCATGCGTTTAGCAAATTGTATCT
TATATCTTGGGTATCCTA

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTCTCTACTTTCCTATTCATCC
AGAAGTGAGCACGCAGCCTCCCACAGGCACTGTGCTTTCCCTACCACGAC
TGTCCCTCAGACTGTGAGCTAAAACACACCTCTCCTTATGTAAGTTCTGC
CTTACTGGGTACTTGGTCAGAGAAAGAGAAAAGTCACCAACACAGCATCT
AGTGCTAGGGACATCTTCTCAGGTCCTGGTACTTAAACAGCATGACTTGA
AGACTCCATGTAGCCCTTGGCCATTGGGTTGGGTTGTCCTGGACTTTGTG
TGGTCCTCATGAAGACTTTAACTTTCTGCATGTGCCAAGGCACACTGTGA
ATCAGTCTCTTGTCCTGGGGCTTTTCGTCCTGTTTGAGAGACTTTGTTCA
GTGTAAGCAGGTGCAGTTCTGGCCCTGGAAGGGCAGCAAATGGCCACTTT
ACCTCAGTTCTCCTGCTGCATTGAGTGAGGAGCTACTCATGACTGAGGTG
TGACTCCAGCAGGTCCGTGGCTTGGGCTTGTGAACCTCCCTCATGAGCCC
TACNATACTGAAAATGAGAGCATCTCTCCTCTTCATTAGAAAACATCCCA
CACTTAGAGATGAAGCTAGTCCAGGGACATGCTCCATTTTGAGCTAATTT
GAGAGAAGAAGTCATTTCTGACTTCCCGTGGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_l12.g1 MSMg01no416_l12.g1 CHROMAT_FILE:
MSMg01no416_l12.g1 PHD_FILE: MSMg01no416_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
         (520 letters)



>mm_chr11_58288965_58289886
          Length = 922

 Score =  967 bits (500), Expect = 0.0
 Identities = 516/522 (98%), Gaps = 2/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctttctctactttcctattcatccagaagtgagcacgcagcctcccacaggcactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctttctctactttcctattcatccagaagtgagcacgcagcctcccacaggcactgtg 260

                                                                       
Query: 61  ctttccctaccacgactgtccctcagactgtgagctaaaacacacctctccttatgtaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ctttccctaccacgactgtccctcagactgtgagctaaaacacacctctccttacgtaag 320

                                                                       
Query: 121 ttctgccttactgggtacttggtcagagaaagagaaaagtcaccaacacagcatctagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ttctgccttactgggtacttggtcagagaaagagaaaagtcaccaacacagcatctaatg 380

                                                                       
Query: 181 ctagggacatcttctcaggtcctggtacttaaacagcatgacttgaagactccatgtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggacatcttctcaggtcctggtacttaaacagcatgacttgaagactccatgtagc 440

                                                                       
Query: 241 ccttggccattgggttgggttgtcctggactttgtgtggtcctcatgaagactttaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttggccattgggttgggttgtcctggactttgtgtggtcctcatgaagactttaactt 500

                                                                       
Query: 301 tctgcatgtgccaaggcacactgtgaatcagtctcttgtcctggggcttttcgtcctgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcatgtgccaaggcacactgtgaatcagtctcttgtcctggggcttttcgtcctgtt 560

                                                                       
Query: 361 tgagagactttgttca--gtgtaagcaggtgcagttctggccctggaagggcagcaaatg 418
           ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagagactttgttcacagtgtcagcaggtgcagttctggccctggaagggcagcaaatg 620

                                                                       
Query: 419 gccactttacctcagttctcctgctgcattgagtgaggagctactcatgactgaggtgtg 478
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 gccactttacctcagttctcctgctgcattgagtgaggagttactcatgactgaggtgtg 680

                                                     
Query: 479 actccagcaggtccgtggcttgggcttgtgaacctccctcat 520
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actccagcaggtccgtggcttgggcttgtgaacctccctcat 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 922
Length adjustment: 10
Effective length of query: 510
Effective length of database: 912
Effective search space:   465120
Effective search space used:   465120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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