Query= MSMg01no417_j16.b1 MSMg01no417_j16.b1 CHROMAT_FILE:
MSMg01no417_j16.b1 PHD_FILE: MSMg01no417_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:32 2005
(269 letters)
>mm_chr11_96862043_96862716
Length = 674
Score = 485 bits (251), Expect = e-142
Identities = 264/271 (97%), Gaps = 5/271 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctggttcgcctatccaaactgagatctgggaactgaaggtcccagaccacacc 63
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggggcgcctatccaaactgagatctgggaactgaaggtcccagaccacacc 263
Query: 64 cctccaaagggactccagaggaagtccccgacctgggcggggttaattagatggcgcttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctccaaagggactccagaggaagtccccgacctgggcggggttaattagatggcgcttt 323
Query: 124 gagatctcaggatgaaaggactgcctagggccattgtccttggcctcttgtccagcttta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagatctcaggatgaaaggactgcctagggccattgtccttggcctcttgtccagcttta 383
Query: 184 aggggggggggg-----aaggtgcagcttgtcccttcaggccccaggcttgggacatcag 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggggggggggtggggaaggtgcagcttgtcccttcaggccccaggcttgggacatcag 443
Query: 239 acattgggagtggcattgccaaggtctggag 269
|||||||||||||||||||||||||||||||
Sbjct: 444 acattgggagtggcattgccaaggtctggag 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 674
Length adjustment: 9
Effective length of query: 260
Effective length of database: 665
Effective search space: 172900
Effective search space used: 172900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no417_j16.g1 MSMg01no417_j16.g1 CHROMAT_FILE:
MSMg01no417_j16.g1 PHD_FILE: MSMg01no417_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:32 2005
(389 letters)
>mm_chr11_97034042_97034830
Length = 789
Score = 692 bits (358), Expect = 0.0
Identities = 385/402 (95%), Gaps = 13/402 (3%)
Strand = Plus / Minus
Query: 1 attgcaagaaaagcttacttaggctgggcgtggtggcgcaggcctttaatcccagcactg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 757 attgcaagaaaagcttacttaggctgggcgtggtggcgcacgcctttaatcccagcactg 698
Query: 61 gggaggcagagacaggtggatttctgagttcgaggccagcctggttgcaggacagccagg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 697 gggaggcagagacaggtggatttctgagtttgaggccagcctggttgcaggacagccagg 638
Query: 121 gctacacagagaaatcctgtctc-------------aaaaaaaaaaaaagcaaagcaaag 167
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 637 gctacacagagaaatcctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaagcaaagcaaag 578
Query: 168 cttacgtagtgccacatctctcaccaggatgaaaacgatgacgacgatgactggaaccct 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cttacgtagtgccacatctgtcaccaggatgaaaacgatgacgacgatgactggaaccct 518
Query: 228 tgcaaagcagctggggtgtgcctcatgctcctgtccacttgctgtgaagatgacattgtg 287
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 517 tgcaaagcagctggggtgtgcctcatgctcctgtccacctgctgtgaagatgacattgtg 458
Query: 288 ccgcatgtccttccctttattaaagagcacatcaagaaccctgactggcgataccgggat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccgcatgtccttccctttattaaagagcacatcaagaaccctgactggcgataccgggat 398
Query: 348 gcagcagtgatggcttttggcagtatcttggaaggaccagag 389
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcagcagtgatggcttttggcagtatcttggaaggaccagag 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
