BAC Information

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BAC

Clone NameMSMg01-417O03
Chromosome11 (Build37)
Map Location 91,059,225 - 91,059,899
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417O03.T7 (MSMg01no417_o03.b1)MSMg01-417O03.TJ (MSMg01no417_o03.g1)
ACCAG513357AG513358
length741752
length of high quality
(start - end)
684 (49 - 732)470 (76 - 545)
definitionCHROMAT_FILE: MSMg01no417_o03.b1 PHD_FILE: MSMg01no417_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:54 2005CHROMAT_FILE: MSMg01no417_o03.g1 PHD_FILE: MSMg01no417_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTAGAACTCTACCTTTGAACAACTCAGCTAGTGCTCTGTTG
CAAATGCAAATTTCTGGGCCAGGGCATTGGATTTAGGTCGAGTTGCACGA
CCATATCTACAGCAAGCTAATGTCTCATCAACTAAAAATCACAGTTGAGT
AATATCCTGGAAAAGTGCTGAGCAGATACATCCTCAGCATGAGACGCTAA
AACACAGGGCAAGACACTCAACACTCAAAGAACATCCTCCCCAAATGTCT
AGGATCCTTTTCAGGACCGTCAAGGCACTGCGTGAGAGGCCACTTGGTCT
TTTCAGACTTTGGTTCCTTTTGGATCTCTGCAAAAAATTGGGACATTTAC
CCCTTACACACACCTTGTAGTTTCAGGTAGGCCAGCATAGATGTACCAGT
GTCTCTCAGTCTTTGTCTTCTGACTTTTCCTTCTCCTAGCTTAAATTTTT
CTCCCCCTTACTGGATTAACTGTCTCTACAAACCATCGTCTCTTTGTAAA
GAACCCTTCCTTCTGTCTCAGCTGTGCCATTGACAAAATTCTCATTAATA
ATAATAATAATAATAAATCCTAATATCAACAACTAAAAGAATATAGAAGT
TTACAGCACCCAATATGCATTTTATTCCATTTGATGACTACAATATTTTG
AGTTTTGCTTTGTGCTTTTTTTTTTAAGGACAAAAAATATG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAGACAAAG
TTTGGAGCTGAGACAAAAGGATGGACCATGTAGAGACTGCCATATCCAGG
GATCCACCCCATAATCAGCTCCCAAACGCTGACACCATTGCATACACTAG
CAAGATTTTATCGAAAGGACCTATATGTAGCTGTCTCTTGTGAGACTATT
CTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATG
GATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACACAAGGAGCTAA
AGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACC
CCAGAGCTCTTGACTCTAGCTGCAAATGTATCAAAAGATGGCCTAGTCGG
CCATCACTGCAAAGAGAGGCCCATTGGACACGCAAACTGTATATGCCCCA
GTACAGGGGAACGCCAGGGCCAAAAAAAAAATGGGAATGAGTGGGTAGAG
AAGTGGGTGGGTTGGAGTTTNTNTNNTNNNTTTTTNTTTTTTTTTTTTTT
TGTTGTTTTTGTTTNTGTTTGNTGTTGTTTTNTGTTTNNTTGGTGGTTGG
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_o03.b1 MSMg01no417_o03.b1 CHROMAT_FILE:
MSMg01no417_o03.b1 PHD_FILE: MSMg01no417_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:54 2005
         (684 letters)



>mm_chr11_91059021_91060106
          Length = 1086

 Score = 1191 bits (616), Expect = 0.0
 Identities = 663/680 (97%), Gaps = 8/680 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagaactctacctttgaacaactcagctagtgctctgttgcaaatgcaaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagaactctacctttgaacaactcagctagtgctctgttgcaaatgcaaatt 264

                                                                       
Query: 65  tctgggccagggcattggatttaggtcgagttgcacgaccatatctacagcaagctaatg 124
           ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 265 tctaggccagggcattggatttaggtcaagttgcatgaccatatctacagcaagctaatg 324

                                                                       
Query: 125 tctcatcaactaaaaatcacagttgagtaatatcctggaaaagtgctgagcagatacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcatcaactaaaaatcacagttgagtaatatcctggaaaagtgctgagcagatacatc 384

                                                                       
Query: 185 ctcagcatgagacgctaaaacacagggcaagacactcaacactcaaagaacatcctcccc 244
           ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 385 ctcagcatgagacactaaaacacagggcaagacactcgccactcaaagaacatcctcccc 444

                                                                       
Query: 245 aaatgtctaggatccttttcaggaccgtcaaggcactgcgtgagagg-ccacttggtctt 303
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 445 aaatgtctaggatccttttcaggaccgtcaaggcactgcatgagagggccacttggtctt 504

                                                                       
Query: 304 ttcagactttggttcctt-t-tggatctctgcaaaaaattgggacatttaccccttacac 361
           |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcagactttggttccttatatg-atctctgcaaaaaattgggacatttaccccttacac 563

                                                                       
Query: 362 acaccttgtagtttcaggtaggccagcatagatgtaccagtgtctctcagtctttgtctt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaccttgtagtttcaggtaggccagcatagatgtaccagtgtctctcagtctttgtctt 623

                                                                       
Query: 422 ctgacttttccttctcctagcttaaatttttctcccccttactggattaactgtctctac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgacttttccttctcctagcttaaatttttctcccccttactggattaactgtctctac 683

                                                                       
Query: 482 aaaccatcgtctctttgtaaagaacccttccttctgtctcagctgtgccattgacaaaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaccatcgtctctttgtaaagaacccttccttctgtctcagctgtgccattgacaaaat 743

                                                                       
Query: 542 tctcattaataataataataataataaatcctaatatcaacaactaaaagaatatagaag 601
           ||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||
Sbjct: 744 tctcattaataataataataataa---atcttaatatcaacaactaaaagaatatagaag 800

                                                                       
Query: 602 tttacagcacccaatatgcattttattccatttgatgactacaatattttgagttttgct 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttacagcacccaatatgcattttattccatttgatgactacaatattttgagttttgct 860

                               
Query: 662 ttgtgcttttttttttaagg 681
           ||| ||||||||||| ||||
Sbjct: 861 ttgcgcttttttttt-aagg 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space:   725224
Effective search space used:   725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)