Query= MSMg01no418_b04.b1 MSMg01no418_b04.b1 CHROMAT_FILE:
MSMg01no418_b04.b1 PHD_FILE: MSMg01no418_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:10 2005
(517 letters)
>mm_chr11_68780038_68780946
Length = 909
Score = 872 bits (451), Expect = 0.0
Identities = 496/517 (95%), Gaps = 15/517 (2%)
Strand = Plus / Minus
Query: 5 gaattccggttt---tcctttccttcctactatatagatgaccgtgggcaagtttcttat 61
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattccggtttatat--tttccttcctactatatagatgaccgtgggcaagtttcttat 696
Query: 62 cttctcaggaaccccttgtaaaatgagataatatctgtgggacatactccaaaggagagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cttctcaggaaccccttgtaaaatgagataatatctgtgggacatactccaaaggagagg 636
Query: 122 ttgcccttgtgttacacgctcagtaatttactgggaagtttggagttgacagaactcttc 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 635 ttgcccttgtgttacacgctcagtaatttactgggaagtctggagttgacagaactcttc 576
Query: 182 ccacttccctgaggtccccgcagctttctttggtgacgttcaggtcaggatgcacgttga 241
||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 575 ccacttccccgaggtccccgcagctttctttggtgacgttcaggtcag-------gttga 523
Query: 242 gcatcttctgatggcttttcaagttgtccctattcatcctcattatactttgttcctcaa 301
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 522 gcatcttctgatggcttttcaagttgtccctattcagcctcattctactttgttcctcaa 463
Query: 302 acatacctatttttaggaatacctcaaaaaacattcctattgttcttagctagtggttaa 361
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 462 acatacctatttttaggaatacctc-aaaaacattcctattgttcttagctagtggttaa 404
Query: 362 tttccctacttcacgagt-ctggaaactctagaagcttgggggtgggagagaggcagatc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttccctacttcacga-tactggaaactctagaagcttgggggtgggagagaggcagatc 345
Query: 421 tgagtcttaggttgtttgccagacaactttgctgtttgtagcatttaggagcctcaaact 480
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 344 tgagtcttaggttgtttgccagacaactttgctgtgtgtagcctttaggagcctcaaact 285
Query: 481 caaaatcctcctgcctcagcatgtggagtgctgaaga 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 284 caaaatcctcctgcctcagcatgtggagtgctgaaga 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 909
Length adjustment: 10
Effective length of query: 507
Effective length of database: 899
Effective search space: 455793
Effective search space used: 455793
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_b04.g1 MSMg01no418_b04.g1 CHROMAT_FILE:
MSMg01no418_b04.g1 PHD_FILE: MSMg01no418_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:10 2005
(507 letters)
>mm_chr11_68603532_68604439
Length = 908
Score = 959 bits (496), Expect = 0.0
Identities = 505/508 (99%), Gaps = 1/508 (0%)
Strand = Plus / Plus
Query: 1 caaatttatcaaagtaagaccctttccgtcttactttatcaggatgcaacagaaagctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatttatcaaagtaagaccctttccgtcttactttatcaggatgcaacagaaagctga 260
Query: 61 cactcactgaatgtggctccatgcgaggaagagaaagtgctggagaaaatttcagttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactcactgaatgtggctccatgcgaggaagagaaagtgctggagaaaatttcagttgta 320
Query: 121 tttactttctctgtaaaggagttctaaagacaggctctacttagccaaatgtcctacaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttactttctctgtaaaggagttctaaagacaggctctacttagccaaatgtcctacaac 380
Query: 181 cttttctagtctgttccatctacgccacttgtagtgcatctggtatttgggctctgagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttctagtctgttccatctacgccacttgtagtgcatctggtatttgggctctgagca 440
Query: 241 caaggcatgtagcaggcaggcaccaggagagcactggctaccctgggaacaccccctagg 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggcaggcagcaggcaggcaccaggagagcactggctaccctgggaacaccccctagg 500
Query: 301 ccccgttacccactgtttctcacatcagagagaatcccaaacccaaactcgcgtgtcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccgttacccactgtttctcacatcagagagaatcccaaacccaaactcgcgtgtcttt 560
Query: 361 tctgaaatagattttttt-ctacttaggaaaagaaactcatggaagaccgaattgctgag 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgaaatagattttttttctacttaggaaaagaaactcatggaagaccgaattgctgag 620
Query: 420 tgttcctctcagctggctgaagaggaagaaaaggcaaaaaacttggccaaaatcaggaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttcctctcagctggctgaagaggaagaaaaggcaaaaaacttggccaaaatcaggaat 680
Query: 480 aagcaagaagtgatgatctcggacttag 507
||||||||||||||||||||||||||||
Sbjct: 681 aagcaagaagtgatgatctcggacttag 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
