BAC Information

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BAC

Clone NameMSMg01-418F14
Chromosome11 (Build37)
Map Location 30,190,990 - 30,191,522
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427
Downstream geneLOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418F14.T7 (MSMg01no418_f14.b1)MSMg01-418F14.TJ (MSMg01no418_f14.g1)
ACCAG513708AG513709
length747757
length of high quality
(start - end)
536 (48 - 583)328 (331 - 658)
definitionCHROMAT_FILE: MSMg01no418_f14.b1 PHD_FILE: MSMg01no418_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:31 2005CHROMAT_FILE: MSMg01no418_f14.g1 PHD_FILE: MSMg01no418_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGTTTCTCACCTGGACCATGAGTCTTGAGATACAGGTTCCAG
GAGAATGTTTCTTGATGTGACTTTACTTAAAGCTTCCAAGATGGTCAGAG
TGGTGCCCCAGGGTCTCATAATGAAAAGCTTCTTCAGAGGGTATGGGGTG
AGAGTAAAGGCTTTTCTTATGTCCCAAGTTCAGTATCCTTGCTCTAGACA
ACTCCTGTACTATCATTCCTGTCTGAGCCATTGCCCACGGTTTTCAGGGG
ATCCGAAGTGAGTAGAGGCTTCTATGGAAAGTCTGAAAGTCGGGGTGGGG
CAGGGTTGTGAGGGGAGCAAGCGAGCTTGAGAGATTTCCTTTCTCCCACC
CACACACTTCCTCTTTCCCACTGGCTCCTGCCTCCGGTCAGGGCTACACA
AACACTGTTAGAGCAGATCCAAGTCAGGCCACACCCTTTCCTTGTTTACA
GACGAACAGGAGGCAGAGAATGGGAATGGGAGACGCCCTGAAATGATTCT
CTCAAAAACCGTTATTCTTAGCCAGGAATGAAGACTTCTTAAAAATTAAC
TGGGCCAGAGCAAAGCTCTTTCTTCCACAAAATTTTAGGGTAACAAGGGG
GTCTGCATGCATGGCCAGCCTCTTGTCTCTGAAGCCACTTCCTAGCACCT
GGCATGGACTATTTACACGGACTTAATCCTGTCAGTCTGTCATGGAT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTTTCACACAAAGGATAA
ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTG
TATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAG
AAAATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTAA
AAATGGCTATCTTGCCAAAAGTTATCTTCAGATTCAATGCAATCCCCATC
AAAATTCCAACTCAATTTTTCAACGAATTAGAAAGGGCAATCTGCAAATT
AATCTGGCATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATA
AAAGAACCCCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGA
GCAATTGTGATAAAAAACTGCATGGTACTGGTACAGCAACAGACAGGTAG
ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT
CACTTGATATTTGACAAGGGAGCAAAAACCATCCAGTGGAAAAAAGACAG
CATTTTCAACATATGGTGCTGGCACAACTGGTGGTTATCATGTACAAGAA
TGCAAATTGATCCATTCCTATCTCTTTGTACTAAGGGCAAATCTAAGTGG
ATTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_f14.b1 MSMg01no418_f14.b1 CHROMAT_FILE:
MSMg01no418_f14.b1 PHD_FILE: MSMg01no418_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:31 2005
         (536 letters)



>mm_chr11_30190787_30191722
          Length = 936

 Score = 1000 bits (517), Expect = 0.0
 Identities = 529/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggtttctcacctggaccatgagtcttgagatacaggttccaggagaatgttt 63
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggtctctgacctggaccatgagtcttgagatacaggttccaggagaatgttt 263

                                                                       
Query: 64  cttgatgtgactttacttaaagcttccaagatggtcagagtggtgccccagggtctcata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttgatgtgactttacttaaagcttccaagatggtcagagtggtgccccagggtctcata 323

                                                                       
Query: 124 atgaaaagcttcttcagagggtatggggtgagagtaaaggcttttcttatgtcccaagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaaaagcttcttcagagggtatggggtgagagtaaaggcttttcttatgtcccaagtt 383

                                                                       
Query: 184 cagtatccttgctctagacaactcctgtactatcattcctgtctgagccattgcccacgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtatccttgctctagacaactcctgtactatcattcctgtctgagccattgcccacgg 443

                                                                       
Query: 244 ttttcaggggatccgaagtgagtagaggcttctatggaaagtctgaaagtcggggtgggg 303
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 444 ttttcaggggatccgaagtgagtagaggcaactatggaaagtctgaaagtcggggtgggg 503

                                                                       
Query: 304 cagggttgtgaggggagcaagcgagcttgagagatttcctttctcccacccacacacttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagggttgtgaggggagcaagcgagcttgagagatttcctttctcccacccacacacttc 563

                                                                       
Query: 364 ctctttcccactggctcctgcctccggtcagggctacacaaacactgttagagcagatcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctctttcccactggctcctgcctccggtcagggctacacaaacactgttagagcagatcc 623

                                                                       
Query: 424 aagtcaggccacaccctttccttgtttacagacgaacaggaggcagagaatgggaatggg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagtcaggccacaccctttccttgtttacagacgaacaggaggcagagaatgggaatggg 683

                                                                
Query: 484 agacgccctgaaatgattctctcaaaaaccgttattcttagccaggaatgaag 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agacgccctgaaatgattctctcaaaaaccgttattcttagccaggaatgaag 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)