BAC Information

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BAC

Clone NameMSMg01-419I24
Chromosome11 (Build37)
Map Location 65,938,383 - 65,938,583
singlet/doubletsinglet
Overlap geneDnahc9
Upstream geneAU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6
Downstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419I24.T7 (MSMg01no419_i24.b1)MSMg01-419I24.TJ (MSMg01no419_i24.g1)
ACCAG514635AG514636
length792756
length of high quality
(start - end)		204 (79 - 282)406 (67 - 472)
definitionCHROMAT_FILE: MSMg01no419_i24.b1 PHD_FILE: MSMg01no419_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:09 2005CHROMAT_FILE: MSMg01no419_i24.g1 PHD_FILE: MSMg01no419_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACC
GCGGAATTCTTTTCCCTCCAAGAATGTTGAGGGCCTCCATAGAATGTGAG
GCCCCTGATTAGTTGTCCTCTGGAAATCATCTATGGGGCTAAGCTTAAGT
TAACCCCAAAGGACCCATATCTCAGCCCACATATATGACTGGGGTGACAG
AGCCTACAGAGGGGTTGAACATAAAACAACGGGCAGATCGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTNANAAAATATNAATAATNTNA
NNNNNAAAANNNACAANTTTTTTTTTTTNATNNAAAAAAAAAAAANAAAA
AAAAAAAATTTTTTTTTATTAAANNAAAAAAAAAATTTTTATTTTTTTCC
NACTATTTTTCTTCTCCCCCCCCCACTTTCCCTTTCCCTTTCTCTCCTTT
TTCCCCTTTTTTTCCCCTTTTTCTCCCCTTTTTCTTTTTCCCCCTTTTTT
TTTTTTTTTCTTCTCCCCCTTTCCCCTTTTTTTTTTTCTTTTCTCCTCCC
TCTCTCCCTACCCATCTTCCCTTTTCCTTCACTCCTTTTCTTCCTTTATT
TCCCCTTCTTTTCTTTTCTNACCTCTTTCTCACTTTTCTCCCCCCATCCA
TTCTTCCCCTATTTCCCCCCCTTCCCTCTCTTTTTTTCTCACCCTCTCAC
TTTTCTTTCTTTTCCCCCCACTCTTCTTTTCCCTTTCCTCTTTTTTCCCC
CCNCTCCTCTTCATACCTTTCTCTTTTTTCCTTCTCCCCTTA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGTTTTTTTTATATATAAAATTATTTTTTTAA
TTAGGTATTTTCTTCATTTACATTTCCAGTGCTATCCCAAAAGTCCCCCA
CCCACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTA
TACTGAGGCATATAAAGTTTGCATGACCAATGGGCCTCTCTTTTCACTGA
TAACTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTC
CAGGGAGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGA
TCCCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTACATTGGGGGCCCTG
TGACCAGATACTTAGAATACCCAAGATATAAGATACAATTTGTGAAACTC
ATGAAACTAAAGAAGAACGAAGACCANAGTGTGGACACTTTGCCCCTTCT
TAGAATTGGGAACAAGGGCTGGTGAGATGGCTCAGTGGGTAAAGCACCCG
ACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCAGCAACCACATGGTGGGT
TAAAACCTCCTAAAGAGATCTTTATCCCTCCTCCGAAGGGCCGAAGAAAG
CTACCGGGGACTTACCTATAAAAAAATAAAAAACCTTTTAAAAAAGAATG
GGAACAAAAACCCCAGTGGGGGTTCCGAGAAAATTTGGGGGTGAAACAAA
GGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_i24.b1 MSMg01no419_i24.b1 CHROMAT_FILE:
MSMg01no419_i24.b1 PHD_FILE: MSMg01no419_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:09 2005
         (204 letters)



>mm_chr11_65938183_65938786
          Length = 604

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagggcctccatagaatgtgaggcccctgattagttgtcctctggaaatcatctatgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagggcctccatagaatgtgaggcccctgattagttgtcctctggaaatcatctatgggg 260

                                                                       
Query: 61  ctaagcttaagttaaccccaaaggacccatatctcagcccacatatatgactggggtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagcttaagttaaccccaaaggacccatatctcagcccacatatatgactggggtgac 320

                                                                       
Query: 121 agagcctacagaggggttgaacataaaacaacgggcagatcgtgtgtgtgtgtgtgtgtg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 agagcctacagaggggttgaacataaaacaacaggcagatcgtgtgtgtgtgtgtgtgtg 380

                                
Query: 181 tgtgtgtgtgtgtgtgtgtgt 201
           |||||||||||||||||||||
Sbjct: 381 tgtgtgtgtgtgtgtgtgtgt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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