BAC Information

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BAC

Clone NameMSMg01-420E12
Chromosome11 (Build37)
Map Location 117,689,595 - 117,689,809
singlet/doubletsinglet
Overlap geneAfmid
Upstream geneJmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1
Downstream geneBirc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E12.T7 (MSMg01no420_e12.b1)MSMg01-420E12.TJ (MSMg01no420_e12.g1)
ACCAG515184AG515185
length712739
length of high quality
(start - end)
215 (311 - 525)246 (321 - 566)
definitionCHROMAT_FILE: MSMg01no420_e12.b1 PHD_FILE: MSMg01no420_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:04 2005CHROMAT_FILE: MSMg01no420_e12.g1 PHD_FILE: MSMg01no420_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCATAATTTGTGGGCGAAAGAGAATATCTACAAAGAGGAGGGAGGATT
GTTGCTCCCGAAACAACANCANAAAAACTTAAAAAAATAATAGAACAGCG
GCCTGTTTTCGTTGGTTTTTTTTCAGGTCAATTTTCGGGGCCACCAAATG
ATGGTCCTTTCAAAGAACGGGTCCCCATCTTTCTAAAGGTTGCGGGCGAC
CCTTTAATACACTTCCTCATGTTGTGGTGACCCCCAACCATAAAACGATT
TTTGTTGCTCTTTCCTAACTGGAGTTTTACTACCGTTATGAATCGTGATA
TATTTTTCTGATATTTCCGGCGGTCTTAGGCAACCCCTGTGAAAGGTTGC
TTCAGTCCCCAAAGGCATCTCGATTTCGATGTTGGGGATTTCCATGTAGA
GAACTGTGCCTTTAGAGCTTAGAGGCCCTTAGCCAGTCAGGAGGGTAGCC
TGAGTGTCTCAGAAGAGCTTGGCCTCGTGCCAGCCTTTTCTGTCTCCAGC
TACACCCTCACCTCCCGCCCCAGCAGAGGCTCACCCATGCGCCTGATATA
AGAGTAATGCCCTTCCATTCAGGGGTGTAGCCCCCTCTCCAACCCCTAAT
AAGCGGCCACAGTATTCCAGAGAGAGTCCCATAGTACCCTGGCTTCCTAT
CTGCACGAAGTTCCCAAAACTTCCTCTGGTTTCTTGCGGATGAACCATCC
GCCGGGTGAGTN
ATGTGGGAGGCCTGGNGGNCGCCTGTTTCATACCTGAGGTGAACTATAGA
AGTAACGCAAAAATTCAGTCAGGAATTGAAAAATACTTATAAACCTCTCT
TTATGCTCTATTTCTGTGATGTGGTAGTGGTGGTTGAGAACTTTAACCGT
GGATAAGATGCCTGAAAATTCATAGTCAACTGTGTGTATGCTCAGATGTA
TGTGTGTACATGTATATATCTTTGTGTCTGTGTATAGCTTGGTTTTCTGC
TTCATTTTAAAGGGTTGTGAAGGGTAAGAATAGAATGTTTAACATGGTGT
TGACACTCTGTACTCAGTTGGAGGGATTGGTAGTAGCAAATGTTTCAGGT
TCCTCCTTGGATGCCTTGACTTTCTAGGTTTGTTTGTTTGTTTGTTTTAT
TAAAGATTTATTTATTTCATGTATATGAGCACACTGTAGCTGTCTTCACA
CACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGGGAACCACCA
TGTGGTTGCTAGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGAG
TGAGTGCTCTTGACTGCTGAGCCATCTCTCCAGCCCACATCTCATTTTCA
GTTCCACTGATTTCTTTCTAGATCCCTAATCTCCAGAATTACCACGTTTG
TTATTTTTATAAAGCAACCCCCTATCTCAGAATCATAAAACTTTTTTTTT
GTTTTCCGAGACAGGGTTTCTCTGTGTTATCCCTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e12.b1 MSMg01no420_e12.b1 CHROMAT_FILE:
MSMg01no420_e12.b1 PHD_FILE: MSMg01no420_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:04 2005
         (215 letters)



>mm_chr11_117689332_117689946
          Length = 615

 Score =  393 bits (203), Expect = e-114
 Identities = 212/215 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttccggcggtcttaggcaacccctgtgaaaggttgcttcagtccccaaaggcatct 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 478 atatttccggcggtcttaggcaacccctgtgaaagggtgcttcagtccccaaagggatct 419

                                                                       
Query: 61  cgatttcgatgttggggatttccatgtagagaactgtgcctttagagcttagaggccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cgatttcgatgttggggatttccatgtagagaactgtgcctttagagcttagaggccctt 359

                                                                       
Query: 121 agccagtcaggagggtagcctgagtgtctcagaagagcttggcctcgtgccagccttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agccagtcaggagggtagcctgagtgtctcagaagagcttggcctcgtgccagccttttc 299

                                              
Query: 181 tgtctccagctacaccctcacctcccgccccagca 215
           || ||||||||||||||||||||||||||||||||
Sbjct: 298 tgcctccagctacaccctcacctcccgccccagca 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)