BAC Information

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BAC

Clone NameMSMg01-420F08
Chromosome11 (Build37)
Map Location 63,895,477 - 63,895,723
singlet/doubletsinglet
Overlap gene2810001G20Rik
Upstream geneTekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10
Downstream geneEG544785, Hs3st3a1, LOC626959, Elac2, AU040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420F08.T7 (MSMg01no420_f08.b1)MSMg01-420F08.TJ (MSMg01no420_f08.g1)
ACCAG515223AG515224
length717739
length of high quality
(start - end)
---247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no420_f08.b1 PHD_FILE: MSMg01no420_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:08 2005CHROMAT_FILE: MSMg01no420_f08.g1 PHD_FILE: MSMg01no420_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCAAAAATTTTGGGCGCGATAAGAGAANTACCATACAAAGAGGAGNG
GAANANNNNTTGCTCCCACAAAGAGGAGAGGACATCGGCTGGTGACGAGA
GCAGATGATGAGGATGATGCTGCAGAGCACCGCTGATGAAGGACCCACCC
GGCTGATGGGTGCTCTCTTATAAAAGCGCGCTTTTCCTCACTCTCTTCTG
ATGACAGCCTTGTTGATAATAGCCGACGAGACGAAGATGACGGCCCTCAT
CCTAGAGTACCGCCGTCCTGCTCCTGCAGGTAGTAGCAGCTGAANAAAAA
AAGCGAGGAAGGAGATTTTTTTTTACCNACAGAGTGTTTCGCCCCCCCCC
GAAAACAGTTTCTTATAAGCGGGTCATCGGAAAGGGCCCCCCAACACACC
GAGATATAAGAAGTTTATATGGGGAAAATCTCGGGGGAACACTATATTTT
TCCCGCTCTCACAATAGTGCACAAAATGGTCCCCGCGCCCGTGGCGCATA
ATAGGGACAGACGTAAACTATATCTCACTCTTTCCAAACTCCCTGAGAAA
GGCCTGGGAGGGGAACAAAAAAAAGAAAGGTGGTTAAATTTAAAAACCCA
AGTTGAAACTTAAGGCCCCAGGCCGAAGCTTTATACGGGAACCTGTTCCT
TGGCTCATTAACTTGAGAGATGTTCTAACTTCTTTCTCTTGAACAAACAA
TTAAACCGGCACCCGCC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCATCAGTAATTTACAAAGCTGCCATGC
ATGCCAAACTGTGCCTAGAGCTGGGGATGGGCCAACCACATTGTTACAGG
TGCTCAGCATGGCTCTGCCCCTGAGGGCCACAATGTAGCAAGAGTGGCTT
AAGGAGAAGGGGCTAGTTTCTCTTCCTCCCTGCTTCCCATCTGCTGGAAG
CACAGTTTAAAGATGTTACTTCCTAGCAGTAGTTGAGACCTCTTGAAGTT
TTCTCATCATGCAAAGAATCATTTATGGGGCTGGAGGTAGAGCTTAGAAG
TGCCTGCTTCATTTAAACCCTCAGTAGCAAGGAACAAAGGAAGGACCCCA
ACTCACGGCCATTAATATATTTCTTTTTATTTATCCCTATTGTAAGTAAG
ATTTTTTTTTTCCCAGAGAGGAAGTATGCTGATGCCAAGGAATACGAAGC
AGAGGCTGGGGAACTTGTAATCAGTGAGAAGCTGGCATGATGAATAATGA
AAACTGAGGGAGTCTGTGGTGGTTTGAAAAAAAAAAAAAAAAAGACCCAC
ATAGGCCCATAGGGAATGGTCCTATTATGAGTGTGGCCCTGTTGGAGGAA
GCGTGTCCCTATGGGTGGGCGCTTCAAGTCTCAGTGGTCAAGCCAGGCCC
AGCCTTTTCTTGTGCCTTTCTGGCGGTGGAAAAATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_f08.g1 MSMg01no420_f08.g1 CHROMAT_FILE:
MSMg01no420_f08.g1 PHD_FILE: MSMg01no420_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:08 2005
         (247 letters)



>mm_chr11_63895277_63895923
          Length = 647

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcagtaatttacaaagctgccatgcatgccaaactgtgcctagagctggggatgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccatcagtaatttacaaagctgccatgcatgccaaactgtgcctagagctggggatgggc 388

                                                                       
Query: 61  caaccacattgttacaggtgctcagcatggctctgcccctgagggccacaatgtagcaag 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 387 caaccacattgttacaggtgctcagcatggctctgcccatgagggccacaatgtagcaag 328

                                                                       
Query: 121 agtggcttaaggagaaggggctagtttctcttcctccctgcttcccatctgctggaagca 180
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agtggcagaaggagaaggggctagtttctcttcctccctgcttcccatctgctggaagca 268

                                                                       
Query: 181 cagtttaaagatgttacttcctagcagtagttgagacctcttgaagttttctcatcatgc 240
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 cagtttaaagatgttactccctagcagtagttgagtcctcttgaagttttctcatcatgc 208

                  
Query: 241 aaagaat 247
           |||||||
Sbjct: 207 aaagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)