BAC Information

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BAC

Clone NameMSMg01-420O17
Chromosome11 (Build37)
Map Location 52,172,799 - 52,173,387
singlet/doubletsinglet
Overlap genenone
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
Downstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420O17.T7 (MSMg01no420_o17.b1)MSMg01-420O17.TJ (MSMg01no420_o17.g1)
ACCAG515670AG515671
length805760
length of high quality
(start - end)
---538 (60 - 597)
definitionCHROMAT_FILE: MSMg01no420_o17.b1 PHD_FILE: MSMg01no420_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:54 2005CHROMAT_FILE: MSMg01no420_o17.g1 PHD_FILE: MSMg01no420_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTGGTGTGGGGGGGATACAAACGAATNATCAGAGAGATNTAATAAG
AAAATGGTGGCGGGGGANGAGNNCCAATTCCTTACTGCTNGGAANNNNGN
NAATACCCAAAACGCCGGAGNGAGCAGGGAGAAGAGGGCCCCNCNNNANC
CACACTTATACACACACACAGAGATGACAGGTTAGAGACACAGATATAGA
GACACAGTGGGAGAGAGATATATGTATGTGTGTATAGATATGGGTATATA
TACATATGCATATATATATACATATGCATATATAGGGGGATTATTAGACA
CAGAGGTAGAGGGGGAGAAATAAAGAGAGAGATATGCAGATAGACAGACA
GAGGTATTTTTTTTTTTAGAGGCAAAGANGCAGAGAGAGAAACACAGATT
TTCTATCCAGAAAGAGGACATAGGAGGGGATATATAGAGAAGCAGACTAG
CGTTGGAAGTAGAGGAGGATAGTTATACCAAAGGAGGTGGTAGACACAAG
TAGCAGATATTGAGGCAAAAGATGAGATGAGATACAAAAAATAGGTGAGA
TAAAGGTAGAAATATGGAGGTATACTGAGTACGATAGATAAAGGGAGGGA
CGGGGGAAGAGATATAGGACAAGGCAGCGGCGAGTATATTTGCTGCACCA
CGTACGTATAATAGAGAGTTGGGGAGTAAGACGGCTGGGGAGGGTAGACG
GTATGTTGGTGAGACGAGAGGGACATGAGATGTAGGTAGAGACGGGAGGT
CACCGAGGGCTATACGGAGAAGATAAGAAGTGTGGGAAGAGATAGCGCAA
CGAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTAATCTGTCATCTGTGCCTTCTCTACCGCAAATAGCTGT
CTCCCCAGCAAAAGTGACACAAGCCACTCGCTGAGTTTTAGGTAAGTGCC
TTACCAGTCCTCTGCATCTCCATTCATTTTAAACTAAAACCAAGACTCCC
AGGGCGCTGAACGGAGGTGGCGCACACCGCCTTTAATCCCAGCACTTGGG
AGGCAGGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGTGTTAGTTCC
AGGACAGCCAAGTTTATACAGAGAAACCCTGTCTCGGAAAAAAAAAAACC
CAAAAAATAAAACAAAACAAAAAAAAACAAGAAAGACTCTCAGGGCGAAG
TTCCGAGAAGCCAGACTTTCTGCCCACCCACGACACACAGCCCTGGGCAT
CAGGGCTCTGGGTCAAGTGTTAAGATTCTTGGAGACAAATCTTGTGTCCC
CAGGTCTTGTCCTTCCGACTCTGCCTCCCTGTACGCCCCTGTGACTCAGC
AGCTTTCCCTGCCTGGCTTTAACTCCGGGAATGGGCTGGGTGTTTGTTGC
CGGGTAGATAGAGCTGCAGACTTGGGAAGCTACGGTTTGAACTCAGGTTC
TTTCTAATGCAAAGCAAGCCCTGTACCACGGAGCTATCTGTTTGGCCACA
TTCTATTTCTAAAGGTCTTCCCTCATAGCCTTAAACAGATATGGGCTTAT
GCCCCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_o17.g1 MSMg01no420_o17.g1 CHROMAT_FILE:
MSMg01no420_o17.g1 PHD_FILE: MSMg01no420_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:54 2005
         (538 letters)



>mm_chr11_52172650_52173587
          Length = 938

 Score =  891 bits (461), Expect = 0.0
 Identities = 534/589 (90%), Gaps = 51/589 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaatctgtcatctgtgccttctctaccgcaaatag----ctgtctccccagcaaaagt 56
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 150 tttaatctgtcatctgtgccttctctaccgcaaatagctgtctgtctccccagcaaaagt 209

                                                                       
Query: 57  gacacaagccactcgctgagttttaggtaagtgccttaccagtcctctgcatctccattc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gacacaagccactcgctgagttttaggtaagtgccttaccagtcctctgcatctccattc 269

                                                                       
Query: 117 attttaaactaaaaccaagactcccagggcgctgaacggaggtggcgcacaccgccttta 176
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 attttaaattaaaaccaagactcccagggcgctgaacggaggtggcgcacaccgccttta 329

                                                                       
Query: 177 atcccagcacttgggaggcag--------ggatttctgagttcgaggccagcctggtcta 228
           |||||||||||||||||||||        |||||||||||||||||||| ||||||||||
Sbjct: 330 atcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccggcctggtcta 389

                                                                       
Query: 229 cagtgttagttccaggacagccaagtttatacagagaaaccctgtctc-gga-------- 279
           |||||||||||||||||||||||||  ||||||||||||||||||||| |||        
Sbjct: 390 cagtgttagttccaggacagccaaggctatacagagaaaccctgtctcgggaaaaaacaa 449

                                                                       
Query: 280 ---------------------------aaaaaaaaaacccaaaaaataaaacaaaacaaa 312
                                      |||||||||||||||||||||||||||||||||
Sbjct: 450 acaaacaaacaaacaaaaaacaaaaacaaaaaaaaaacccaaaaaataaaacaaaacaaa 509

                                                                       
Query: 313 aaaaaa---caagaaagactctcagggcgaagttccgagaagccagactttctgcccacc 369
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaaaaaaaccaagaaagactctcagggcgaagttccgagaagccagactttctgcccacc 569

                                                                       
Query: 370 cacgacacacagccctgggcatcagggctctgggtcaagtgttaagattcttggagacaa 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cacgacacacagccctgggcatcagggctctgggtcaagtgttaagattcttggagacaa 629

                                                                       
Query: 430 atcttgtgtccccaggtcttgtccttccgactctgcctccctgtacgcccctgtgactca 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atcttgtgtccccaggtcttgtccttccgactctgcctccctgtacgcccctgtgactca 689

                                                            
Query: 490 gcagctttccctgcctggctttaactccgggaatgggctgggtgtttgt 538
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gcagctttccctgcctggctttaactccgggaatgggctgggtgtttgt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)