Query= MSMg01no421_i04.b1 MSMg01no421_i04.b1 CHROMAT_FILE:
MSMg01no421_i04.b1 PHD_FILE: MSMg01no421_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:42 2005
(246 letters)
>mm_chr11_3277182_3277827
Length = 646
Score = 451 bits (233), Expect = e-131
Identities = 242/245 (98%)
Strand = Plus / Minus
Query: 1 gagaaaccctgtattcaaacaaacaaacaaagggaggtagccgtccttacagtgagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaaccctgtattcaaacaaacaaacaaagggaggtagccgtccttacagtgagaaat 386
Query: 61 gtaatgagaacatgtgcatgcataacaagcttacctctgtgtctatctcgggggtctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaatgagaacatgtgcatgcataacaagcttacctctgtgtctatctcgggggtctcca 326
Query: 121 tgttttctagtctgaagactaagtacctacacttctggagcactcgcctttcagggcgat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttttctagtctgaagactaagtacctacacttctggagcactcgcctttcagggcgag 266
Query: 181 ttaatggggtgcagttatgtacgctgcccaggctgactgtgagactgagctcaggctgtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaatggggtgcagttatgtacgctgcccaggctgactgtgagactgagctcaggctgtg 206
Query: 241 attcc 245
||||
Sbjct: 205 gttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no421_i04.g1 MSMg01no421_i04.g1 CHROMAT_FILE:
MSMg01no421_i04.g1 PHD_FILE: MSMg01no421_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:42 2005
(523 letters)
>mm_chr11_3134697_3135619
Length = 923
Score = 988 bits (511), Expect = 0.0
Identities = 520/523 (99%)
Strand = Plus / Plus
Query: 1 agctgaaaatagttgatttggattcttaggtctatcctcgataaagaactttgagcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgaaaatagttgatttggattcttaggtctatcctcgataaagaactttgagcttta 260
Query: 61 ggacagcacttgagatgatgacgcacaaggatctcaaattttaaggccatcctgggctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagcacttgagatgatgacgcacaaggatctcaaattttaaggccatcctgggctcc 320
Query: 121 ataatgagtttgcagctacatggaagagccagtcacaagtaatggctttctggccagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatgagtttgcagctacatggaagagccagtcacaagtaatggctttctggccagcac 380
Query: 181 ttgtaattggtaaacagtgagcagtgaagtcctgtggttgttacagaatatgcctggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaattggtaaacagtgagcagtgaagtcctgtggttgttacagaatatgcctggaag 440
Query: 241 aagcagctccagcaggcttggtgtttctactattgaaacactagagacagctggctgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcagctccagcaggcttggtgtttctactattgaaacactagagacagctggctgctt 500
Query: 301 gcccttgccagtcatacaccttagtgttgtccacagtgatggggacttgtaaggagagtc 360
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 501 gcccttgccagtcatacaccttagtgttttccacagtggtggggacttgtaaggagagtc 560
Query: 361 tcagagcactggactcagctttaccaccagttggcttgtcaagcacggccagtttgctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagagcactggactcagctttaccaccagttggcttgtcaagcacggccagtttgctga 620
Query: 421 atagaaatgttcttagcccagcctgagagctctcagaaaaggacaaaggtgacagagtag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagaaatgttcttagcccagcctgagagctctcagaaaaggacaaaggtgacagagtag 680
Query: 481 tgtgaaggttgcacgagcaggaaaggctgttaagagctctgct 523
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgaaggttacacgagcaggaaaggctgttaagagctctgct 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
