Query= MSMg01no421_l24.b1 MSMg01no421_l24.b1 CHROMAT_FILE:
MSMg01no421_l24.b1 PHD_FILE: MSMg01no421_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:02 2005
(484 letters)
>mm_chr11_45491491_45492374
Length = 884
Score = 853 bits (441), Expect = 0.0
Identities = 469/483 (97%), Gaps = 12/483 (2%)
Strand = Plus / Plus
Query: 3 ggaattcaataaagcgatcc-gctcccccctcctgccccacctttactttctacaatcca 61
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaataaagcga-cctgctcccccctcctgccccacctttactttctacaatcca 261
Query: 62 tcttacagcgggagaccattatccactcaaacaacgttcagtttcatctgcattaccact 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcttacagcgggagaccattatccactcaaacaacgttcagtttcatctgcattaccact 321
Query: 122 tcaagaaaacgcgcaaaggactcacacaaatgggcgtgtagtaaatttagtctgttaata 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcaagaaaacgcgcaaaggactcacacaaatgggcgtgtagtaaatttagtctgttaata 381
Query: 182 ggttcattctttattaggtatttatttcgggaggcgaagtcctaattagatcaagtggaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggttcattctttattaggtatttatttcgggaggcgaagtcctaattagatcaagtggaa 441
Query: 242 gcactaaaaagctgtgggaacccacagagattctagaattcgatggatttggtgtaggtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcactaaaaagctgtgggaacccacagagattctagaattcgatggatttggtgtaggtc 501
Query: 302 tcgggttttctttttattttctttcttcagttggctggagaaatgcacgcagcaatttca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcgggttttctttttattttctttcttcagttggctggagaaatgcacgcagcaatttca 561
Query: 362 ggccctcagatgagagttggaggtgaaaaaaacaaaaaaacaaaaaaaacaaaaaaacaa 421
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct: 562 ggccctcagatgagagttggaagtgaaaaaaacaaaaaaacaaaaaaa-caa-----caa 615
Query: 422 aaaaaaaaaaacacgtaaggaccatttgtgtgaagaaatagcatttgtctttcttctaaa 481
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaaaaaata----cgtaaggaccatttgtgtgaagaaatagcatttgtctttcttctaaa 671
Query: 482 gtt 484
|||
Sbjct: 672 gtt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_l24.g1 MSMg01no421_l24.g1 CHROMAT_FILE:
MSMg01no421_l24.g1 PHD_FILE: MSMg01no421_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:02 2005
(382 letters)
>mm_chr11_45657373_45658154
Length = 782
Score = 692 bits (358), Expect = 0.0
Identities = 376/382 (98%)
Strand = Plus / Minus
Query: 1 atctgagacccctcaggtctaagcaccctcattgtcaaattgagtctcagtcttactggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 atctgagacccctcaggtctaagcaccctcattgtcaaattgagtctcagtcttactggg 523
Query: 61 ttgttgtgagtagttgatgggttgaaatatattaaatttctaccataggggatgaaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttgttgtgagtagttgatgggttgaaatatattaaatttctaccataggggatgaaaaga 463
Query: 121 tggttgaatagtccagagatctcaagttgggttcctagcttccaactccatttaggaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tggttgaatagtccagagatctcaagttgggttcctagcttccaactccatttaggaagc 403
Query: 181 tcacaattgtctatgtcctcttttggccttcctaggaatctatactcacacatgcataca 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcacaattgtctatgccctcttttggccttcctaggaatctatactcacacatgcataca 343
Query: 241 cagagacccctattattctttttaaaaaattctaccaaagcacttggcatcacttaaata 300
|||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagagacccctaaaaatcttttaaaaaaattctaccaaagcacttggcatcacttaaata 283
Query: 301 caaggtctattactgtttatatccagacagatatctcagttgatgtgggagagtgagtat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caaggtctattactgtttatatccagacagatatctcagttgatgtgggagagtgagtag 223
Query: 361 tggaggaggctcattaactctt 382
||||||||||||||||||||||
Sbjct: 222 tggaggaggctcattaactctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
