BAC Information

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BAC

Clone NameMSMg01-422J24
Chromosome11 (Build37)
Map Location 109,457,584 - 109,457,982
singlet/doubletsinglet
Overlap geneWipi1
Upstream geneCcdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg
Downstream genePrkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422J24.T7 (MSMg01no422_j24.b1)MSMg01-422J24.TJ (MSMg01no422_j24.g1)
ACCAG516970AG516971
length785754
length of high quality
(start - end)
54 (57 - 110)401 (70 - 470)
definitionCHROMAT_FILE: MSMg01no422_j24.b1 PHD_FILE: MSMg01no422_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:07 2005CHROMAT_FILE: MSMg01no422_j24.g1 PHD_FILE: MSMg01no422_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGACCGCGGAATTCCCTAGAT
TTCTAAACTGCAAAGCCTACTGTGCATCCTCTGGCTATACGGGACCATGA
ATAATTTCTGATTATGGGCAGGACTATTCGNCCGGCAAGGAAATGAAAAT
ATTNNTCCTGAAATACCCTCAGCGGATATGGTACCCCAGAGCAGTTTAAT
GCGGAAGGAACTGAGNNNAAGTGGGGGACGGACTTTCTCNTAATATGGAA
AGGACGGCCCCCNGAAAAATGGAAAGCAGGACCTTGTGGGTAGAAACCGA
CTCGAGGGGATTGTTTTAATTCCCCNGGAAGTGGCCGGGGAAACCTAAAA
AAAAATGCTTGTTAAAAAAGGCGCCGGGAAATTTACCCAAGGGGCCACCC
GGTTACCCGCAATAAAAAAGCCCCCGAAAAAAAAAAAAAACCTTTTTTGG
GGAGACCCCCCCGGGAAAAAAAAAAAAAAAAGGGGCCCCGGGGAAAATAA
CCACAACTTTTTTTTCTCTTAAAATTTTAAAAAAAAAACCCCTCCGGGGG
GGGGGGGGGGAAAGGGGTAAAAAAAAAAAAAAACAAACCCCCTCCCTCTT
TTTATTTTATACACCCCCCCCCGTGGGCGCCTCCCCCCCCAAAAAATCTC
TTTTTTTTTTTTAATAAGAAAACCGAAAATAAAAATCCTCTCTTCCTTCA
CCTTTTATACCATATAAAAAAAATATATTCCTCTCTCAAACCCCAAAATA
CAAAATATGGGTGCGGGGGGGCGGGGGGCGGGAGG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAATTTGGTGATATGTTGGAGTACTAAATT
TGGTTAAAGTCTCAGGACTTAACGTTGTGTGTTAAGTTTCTGGCGTTTAA
GATTGGAGGAGCTTGTATGTGGTAGGATGAAGTCCCAGGTGATTGACATC
TTACAAATTCATTGAGCTGAAAGTGACCAAGAGGGACACACACACACACC
AGAGCAGTTTGTGGATCCATCTAACAACCCAGGTTAATATTTTTAAGTCA
TCAATTAGAGCACGTGTTGTCCTGTACCCACGTGGTGGCTCACGACTATC
TGTAACTCCAGTTCCAGAGGAGCAGACACCCTCCTCTGAGATCAACAGGT
ACCAGGCACACACATACAAATATGTAGGTATACCGCATACAGACTTCCAT
AGTGCACAAACACACATGCAGGCAGAACATTCTTACCTATAAGAGTTTAT
AATCTAGAAAACATTCTAAGGAAAAAATTAATGTTTAATATAAAAGCCGG
GTTCACACTCCATGTGCCTAAATGACTTCTTCTTTTACTCTCAGTTTCCC
ATTTCCTGACTTTTGATGAGATTCACGGCCTTTGTGGCCCCCCCCCAGGG
GTTTGTGAACCCTGTTTTCCTTTGTTGGAAAACCCAAAGGGAAAACCCCC
CCCCTGTGATATTAACCCCCCGGATTCTGTGAAAGTGAGGNNATTGGTCT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_j24.g1 MSMg01no422_j24.g1 CHROMAT_FILE:
MSMg01no422_j24.g1 PHD_FILE: MSMg01no422_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:07 2005
         (401 letters)



>mm_chr11_109457534_109458332
          Length = 799

 Score =  716 bits (370), Expect = 0.0
 Identities = 393/402 (97%), Gaps = 4/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaattt-ggtgatatgttggagtactaaatttggttaaagtctcaggacttaacgttgt 59
           ||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcaatttgggtgataagctggaatactaaatttggttaaagtctcaggacttaacgttgt 390

                                                                       
Query: 60  gtgttaagtttctggcgtttaagattggaggagcttgtatgtggtaggatgaagtcccag 119
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 389 gtgttaagtttctggcgtttaagattggaggagcttgtatgtggtag---gaagtcccag 333

                                                                       
Query: 120 gtgattgacatcttacaaattcattgagctgaaagtgaccaagagggacacacacacaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtgattgacatcttacaaattcattgagctgaaagtgaccaagagggacacacacacaca 273

                                                                       
Query: 180 ccagagcagtttgtggatccatctaacaacccaggttaatatttttaagtcatcaattag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccagagcagtttgtggatccatctaacaacccaggttaatatttttaagtcatcaattag 213

                                                                       
Query: 240 agcacgtgttgtcctgtacccacgtggtggctcacgactatctgtaactccagttccaga 299
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 212 agcacgtgttgtcctgtacccacgtggtggctcacaactatctttaactccagttccaga 153

                                                                       
Query: 300 ggagcagacaccctcctctgagatcaacaggtaccaggcacacacatacaaatatgtagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggagcagacaccctcctctgagatcaacaggtaccaggcacacacatacaaatatgtagg 93

                                                     
Query: 360 tataccgcatacagacttccatagtgcacaaacacacatgca 401
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  tataccgcatacagacttccatagtgcacaaacacacatgca 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 799
Length adjustment: 9
Effective length of query: 392
Effective length of database: 790
Effective search space:   309680
Effective search space used:   309680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)