BAC Information

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BAC

Clone NameMSMg01-423A09
Chromosome11 (Build37)
Map Location 120,665,739 - 120,822,471
singlet/doubletdoublet
Overlap geneFasn, Ccdc57, LOC100043454, Slc16a3
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l
Downstream geneCsnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A09.T7 (MSMg01no423_a09.b1)MSMg01-423A09.TJ (MSMg01no423_a09.g1)
ACCAG517276AG517277
length754726
length of high quality
(start - end)
176 (57 - 232)567 (64 - 630)
definitionCHROMAT_FILE: MSMg01no423_a09.b1 PHD_FILE: MSMg01no423_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:36 2005CHROMAT_FILE: MSMg01no423_a09.g1 PHD_FILE: MSMg01no423_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,665,739 - 120,665,914)(120,822,005 - 120,822,471)
sequence
GCGGCCGCTATACGACTCCACTTTCGCACGGATCCGCGGAATTCACAGAG
TGCACCCGCTTCTGCCCCACAAGTGCTGGGATTGGAGGTGTGCACCACCA
CTGCCTGGCCAGTGCTTTCTGCGTTGAGGTTTTCCATATTCACCAGCTTA
TTAGATATATTCTTTATTGCTCACTGCAGAGTGTGGCACCAACTGCTTTA
TTCTTTGCTAGGGCTACGGGTGTATGCCAATGATCTTTTTTACATCCTTT
CCTTTCTCCTCTCTTTCCCCTCCCTTCCTCCGTGTTTTCTGATCGAGGAT
ATTTATCCTTTTGCCTCCTGAATAGCAGATGAGCATTCTACCCTGAGCTA
CACTCAAGTCCATTGACTGCTTCCAGCTTCTCTTAGATTATTATCCGATG
CTCATTTTTTGTCTTCCCCATTCAAGATTTTTTTCAGGTCCTCGGTGAAC
AAATGATTTTAATATGATGACCCCTTGCATTCCTTTGTTATGCTACTATT
ATTCTTTTTGCCTCATACTCCCTACTGCCCTTCTTAGTTGTACTCTGTCC
TTGCACAATCTTCGTTGTCCCTCGTGATTTCCAGTATTTCTTTTTTCTTC
TTCCCTAATATCTCCCTTCCACCCCTCCTTGTTCTCCCTTTCTTTTTTTT
CTTCCCCCTTTATCTCATTTATCTCTTCGCCCTTTACTCCTTCAGCCCCA
TTGTTTCTTCTATCCTTCCTTTGCTTCTTTGTGTCGCTGTCTCCTCTCTC
TCTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTAATGTGTCCCACAGCCTGATGAGCTTGACCAGTTG
AACATGGTAGAGTAATCCCCACTCTCCTGCTGCTCTTAACCCCGCCACTT
ACCTTGCTCTTGTCTCTTACAAGTTATTCTTCAGCCTTTTCTACCCCTAT
ACCTTAAACATTCCAAGTTGGCTTCTAGCTGAATTCCAGGAGGGAATCTG
TTTTCCCACTCCGTCCCCTCATTAGCTAAGACAGTGTTTCTTAACCTGTG
GGTTATGTTATAGCCACTTGAACAAATCTCCAAAAATATTTACATCATGA
TTCATAAGAGCAAAATTGGTTTTTTAGTAGCGACAGAATAATTTTATGGT
TGGGAGTCTCCATAACATGAGAACTGTAAGAACTAGCAAGGTTGAGAAAC
ACTGAGCCAGGAGATGAAATATGGGTACAGGCTCTGTCTACATGGGCTAC
TTCCCCAGCCTAGTGCTCCCTGCTGTTTAAAGCCAGGCAAAGTACAGGGG
ACCCTATACTTCCCCTCCTGTAAAGGCACTTAGGCTAGAGGTGGAAGGAC
CAGTCTTGGAGCTAGAACTGGGTGGACTGCACATCCAAGAGGCCATTGTC
TACACTGAAGACTGGTCCTACCATCAGTTCTCCGTGCATCTGAGCAGCAT
TCTTTCAGGAGCCCCACCCTGATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a09.b1 MSMg01no423_a09.b1 CHROMAT_FILE:
MSMg01no423_a09.b1 PHD_FILE: MSMg01no423_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:36 2005
         (176 letters)



>mm_chr11_120665539_120666114
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcttctgccccacaagtgctgggattggaggtgtgcaccaccactgcctggccagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgcttctgccccacaagtgctgggattggaggtgtgcaccaccactgcctggccagtgct 260

                                                                       
Query: 61  ttctgcgttgaggttttccatattcaccagcttattagatatattctttattgctcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgcgttgaggttttccatattcaccagcttattagatatattctttattgctcactg 320

                                                                   
Query: 121 cagagtgtggcaccaactgctttattctttgctagggctacgggtgtatgccaatg 176
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 321 cagagtgtggcaccaactgctttattctttgttagggttacgggtgtatgccaatg 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no423_a09.g1 MSMg01no423_a09.g1 CHROMAT_FILE:
MSMg01no423_a09.g1 PHD_FILE: MSMg01no423_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:36 2005
         (567 letters)



>mm_chr11_120822005_120822971
          Length = 967

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaatgtgtcccacagcctgatgagcttgaccagttgaacatggtagagtaatccccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctaatgtgtcccacagcctgatgagcttgaccagttgaacatggtagagtaatccccact 408

                                                                       
Query: 61  ctcctgctgctcttaaccccgccacttaccttgctcttgtctcttacaagttattcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 407 ctcctgctgctcttaaccccgccacttaccttgctcttgtctcttacaagttactcttca 348

                                                                       
Query: 121 gccttttctacccctataccttaaacattccaagttggcttctagctgaattccaggagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 347 gccttttctacccctataccttaaacattccaagttggcttctagctgaattccagaagg 288

                                                                       
Query: 181 gaatctgttttcccactccgtcccctcattagctaagacagtgtttcttaacctgtgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaatctgttttcccactccgtcccctcattagctaagacagtgtttcttaacctgtgggt 228

                                                                       
Query: 241 tatgttatagccacttgaacaaatctccaaaaatatttacatcatgattcataagagcaa 300
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aatgtcatagccacttgaacaaatctccaaaaatatttacatcatgattcataagagcaa 168

                                                                       
Query: 301 aattggttttttagtagcgacagaataattttatggttgggagtctccataacatgagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aattggttttttagtagcgacagaataattttatggttgggagtctccataacatgagaa 108

                                                                       
Query: 361 ctgtaagaactagcaaggttgagaaacactgagccaggagatgaaatatgggtacaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ctgtaagaactagcaaggttgagaaacactgagccaggagatgaaatatgggtacaggct 48

                                                          
Query: 421 ctgtctacatgggctacttccccagcctagtgctccctgctgtttaa 467
           ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 47  ctgtctacatgggctccttccccagcctagtgctccctgctgtttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)