Query= MSMg01no423_n06.b1 MSMg01no423_n06.b1 CHROMAT_FILE:
MSMg01no423_n06.b1 PHD_FILE: MSMg01no423_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:36 2005
(488 letters)
>mm_chr11_110857842_110858729
Length = 888
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 5 gaattcaccag-atttcacttaaaaaaaattcaacatcgactaattattgaaaatgatgc 63
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagaattt-acttaaaaaaaattcaacatcgactaattattgaaaatgatgc 263
Query: 64 taagccttcatttaaagaaaatgaacactggacagtgagtaagtgactcattccttctct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagccttcatttaaagaaaatgaacactggacagtgagtaagtgactcattccttctct 323
Query: 124 tatccccaaagaaaagaaagcaaagaaaacaaccacaaatgaaagcagtttcctgaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatccccaaagaaaagaaagcaaagaaaacaaccacaaatgaaagcagtttcctgaagaa 383
Query: 184 catccaatgtccttgaactaataccaaggttgttgataatttctctagggtcacctacta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catccaatgtccttgaactaataccaaggttgttgataatttctctagggtcacctacta 443
Query: 244 tcttggaacccatgtgaaatcatgttgggcaagatgctgtttgcctttggtatagggtta 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 tcttggaacccatgtgaaatcatgttgggcaagaggctgtttgcctttggtatagggtta 503
Query: 304 catagtcaggcagggtgtgtgtttccacagaaatctctactgtgacagtaagaaagccca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catagtcaggcagggtgtgtgtttccacagaaatctctactgtgacagtaagaaagccca 563
Query: 364 cacacaagaagatcagacttggatgaagttgtaccagccctgagatgtcagcacgagagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacacaagaagatcagacttggatgaagttgtaccagccctgagatgtcagcacgagagg 623
Query: 424 attcagccttctgggtcaacgcgatgtttagggggcagcatgtggccacttggtaatttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attcagccttctgggtcaacgcgatgtttagggggcagcatgtggccacttggtaatttg 683
Query: 484 aggga 488
|||||
Sbjct: 684 aggga 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_n06.g1 MSMg01no423_n06.g1 CHROMAT_FILE:
MSMg01no423_n06.g1 PHD_FILE: MSMg01no423_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:36 2005
(246 letters)
>mm_chr11_110978109_110978753
Length = 645
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 aaatgaagatgcatgttttcagtgatctttttcaatagagtgatagttttgtcggtacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatgaagatgcatgttttcagtgatctttttcaatagagtgatagttttgtcggtacag 386
Query: 61 ctctcacagatttagagcctgactccattaggactaggagtgatagttttgtcggtacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctcacagatttagagcctgactccattaggactaggagtgatagttttgtcggtacag 326
Query: 121 ctctcacagatttagagcctgactccattaggactagtttcatgttctagaacttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ctctcacagatttagagcctgactccattaggactagtttcatgttctagaac-tttttt 267
Query: 181 ttttttttttgcatggttgaaaatgctttaaggagtcttgagagagtcattccgcacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttttttttgcatggttgaaaatgctttaaggagtcttgagagagtcattccgcacttt 207
Query: 241 tcaaca 246
||||||
Sbjct: 206 tcaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
