BAC Information

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BAC

Clone NameMSMg01-423P07
Chromosome11 (Build37)
Map Location 69,500,074 - 69,500,497
singlet/doubletsinglet
Overlap geneTnfsf12-tnfsf13, Tnfsf12
Upstream geneMyh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf13
Downstream geneLOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423P07.T7 (MSMg01no423_p07.b1)MSMg01-423P07.TJ (MSMg01no423_p07.g1)
ACCAG517989AG517990
length731814
length of high quality
(start - end)		423 (59 - 481)31 (647 - 677)
definitionCHROMAT_FILE: MSMg01no423_p07.b1 PHD_FILE: MSMg01no423_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:46 2005CHROMAT_FILE: MSMg01no423_p07.g1 PHD_FILE: MSMg01no423_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGTTACCGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGGTG
TCTGGGCTGTTGCCGCTGCGGCCAGGGTCTTCCCTTCGGATCCGCACCCT
CCCCTGGGCTCATCTTAAGGCTGCCCCCTTCCTAACCTACTTTGGACTCT
TTCAAGTTCACTGAGGGGCCTTGCTCTCCCAGATTCCTTAAACTTTCCCT
GGCTCCAGGAGCATCACCACACCTCCCTACCCCACCCCCACTCCTCCACC
CCCTCGCTGTTCTTTGGTCCAGTCCTGTCCTCTCCTCAAAGGCAGCCAGA
GCTTGTTCACATGTTTTCCATTCCACAGACGTATCCTTGCTCTTCTTTAA
CATCCCATCCCACCACAACTATCCACCTCACTAGCTCCCAAAGCCCCTAC
TTATCCCTGACTCCCCCCCCACCCACCCGACCACGTGTTTATTGACTTTG
CGTACCATCCACTGATATGGGCTGTTACTGGTGTCTTGAATCCCGAGAAC
CTGGGACTATGTTATAATTTCCCCCTGTTATGTGCTAATACCTGTTCATT
AGTTTCCTCCTCGGATTCCCTTTTATTTTTTAATATCCCCCCCTTTATTT
TTTATTTTGCCTCTATGTTCTTTGGCTTACTACCTATCACATTCCTCCCC
TTCCTTCTCTTTTGTTTCCCCGATTTTTTTT

NAGGCCTGGGNNCGNCTTTTCATCNACTTTAGGTGACCTATAGATTGCGC
GAGTAATTGAGAGGCGGCGGGCGGGGTGGCGGAGCAAGAGTAGAGGACGG
AGAGAGATATCTCTCTTGTNACNGCAACCGNCTGAAACCTTGTTGNCTGA
TGANGACNGTACATTGGACANTANGAAATGACCCTGATTGGGGACCCCAG
GGCCCAGAAACGGGGTATTTTACTGAAAAAATTCGGTATGTAACNNGCCC
TTCAAAATTCCGGGNTAAAAACCTTAAATTTTTGTTCCCGGAAAAATTTT
TTTTTTTTTNNAAANNNNTNTTTTTTTTTAAAGGTGGGGGTTTTTCCCTT
AAAAGAACCCCCTTTTGGGAAATCCTTTTTTGGGGGTTTTTTTACCATTT
TGGNNNAAAAAATTTTTTTAATATAAAAATTTTTTGGAAATTNTTTTTTT
TTGTGTCCTCTTTTTTNNNNTNTTTTTTTTTTTTCTTTTTCCANNNNNTT
TTTTCNTTTTTTTTCCCTCTTTTTTTTNTNTTTTTTTCTATTTTTTTTTC
TTTTCCTCCTTTTTCTTTTTNNNNTNTTNNNNNTTTTTNTTTTTTTTTTT
TTTTTTTTTTNNNTNNTTCTTTTNTTTTTTTTTTTTTTTTNTTTNTTTTT
TTTCTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNNTTTTTTTTC
TCNTTTTTTTTTTTTTTTTTNTTTNNTTCTCTTTTTTCTTTTTTTTTCCN
TTTCTTCTTTTTTTTTGTTNNTNTTTTTTTCCTTCTTTATACATCTCCCC
CGCTCCTTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_p07.b1 MSMg01no423_p07.b1 CHROMAT_FILE:
MSMg01no423_p07.b1 PHD_FILE: MSMg01no423_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:46 2005
         (423 letters)



>mm_chr11_69499874_69500697
          Length = 824

 Score =  789 bits (408), Expect = 0.0
 Identities = 420/424 (99%), Gaps = 1/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagcaagctctcctgggccccagctccgtttgtgccaggtgtctgggctgttgccgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcagcaagctctcctgggccccagctccgtttgtgccaggtgtctgggctgttgccgctg 565

                                                                       
Query: 61  cggccagggtcttcccttcggatccgcaccctcccctgggctcatcttaaggctgccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cggccagggtcttcccttcggatccgcaccctcccctgggctcatcttaaggctgccccc 505

                                                                       
Query: 121 ttcctaacctactttggactctttcaagttcactgaggggccttgctctcccagattcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcctaacctactttggactctttcaagttcactgaggggccttgctctcccagattcct 445

                                                                       
Query: 181 taaactttccctggctccaggagcatcaccacacctccctaccccacccccactcctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaactttccctggctccaggagcatcaccacacctccctaccccacccccactcctcca 385

                                                                       
Query: 241 ccccctcgctgttctttggtccagtcctgtcctctcctcaaaggcagccagagcttgttc 300
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccccctcgctgctccttggtccagtcctgtcctctcctcaaaggcagccagagcttgttc 325

                                                                       
Query: 301 acatgttttccattccacagacgtatccttgctcttctttaacatcccatcccaccacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatgttttccattccacagacgtatccttgctcttctttaacatcccatcccaccacaa 265

                                                                       
Query: 361 ctatccacctcactagctcccaaagcccctacttatccctgactccccc-cccacccacc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 264 ctatccacctcactagctcccaaagcccctacttatccctgactcccccacccactcacc 205

               
Query: 420 cgac 423
           ||||
Sbjct: 204 cgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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