BAC Information

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BAC

Clone NameMSMg01-423P19
Chromosome11 (Build37)
Map Location 27,218,480 - 27,218,834
singlet/doubletsinglet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423P19.T7 (MSMg01no423_p19.b1)MSMg01-423P19.TJ (MSMg01no423_p19.g1)
ACCAG518013AG518014
length754766
length of high quality
(start - end)
543 (28 - 570)525 (60 - 584)
definitionCHROMAT_FILE: MSMg01no423_p19.b1 PHD_FILE: MSMg01no423_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:48 2005CHROMAT_FILE: MSMg01no423_p19.g1 PHD_FILE: MSMg01no423_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATATCCAGAGGATCCGCGGAATTCCCTGATATTCC
AAGCTGGAGATGACCACCAGTCCAGTGCAGCACAGGTCTGGGTAGGGCAT
GCCCAAGATGATCCCTGCTCAGTGCCATAATGTATGCATTGCAAGACAAA
TCCTGAGATGTCATCAGATTCTCAGAGACTCTGGGCAGCACTAAGAGAAG
CAAGTAAGTGGTGGAGAAATGGAAAAGAAGGAGGAACATGGATGTGGGCA
CAATGAAGAGAACAATGACATTTCATTTCTCAATGAAGAGACTGGACATT
TGAGGATAGTGAGGAATAGCCAGATATGTATAGCCAGTGATGCCACCTTG
GATCATGGTGGGGTTCTGGCCTGTGCTGCCACCAGGGCCTACATCTGGAT
CTGTGGCCTTATAGCAGCAGAGATTTGTTACCATCAATAGTGAGGTAAAT
GTACTTAGTCTGAGCTGATGTCCAGGGACATGGCCTTACCTATCACCTGG
GTGTCATAAGAGAGCTAATCCCTGGAACTTGAGAGTAGAAAAATTGACCC
TACCCCTAGCCAGCTCCAGTACTCAGAAAAATGTCCCTGCACATTGTGAA
AGTGGTGAAGGAACTGGCTCTGAGGAGATATGNACATGGAAAAAGCTGTC
CCTGTAATGAAATTACGCAGGGAGAGATACCCTCTTACCCTCTTGGGGCT
GACACCTGGGGAAGTTGGAAACCCGGCCCCCAGGGTATTAAAGCGGTAAT
TTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAGAAACACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAATCTCAGGTGAC
AGCAGATGCTGGGTAGGAAGTGGAGGAAGGGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCAATACCTCTCTTG
GGCATATATCCAGAAGATGTCCCAACCAGTAAGAAGGACACATTCTCCAC
TATGTTCATAGCAGCCTTGCTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACA
ATGGAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGC
AAATGGATCGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACA
AAGGAACTCGCACAATATGTACTCCCTGATACGTGGATAGAAGCCCAGAA
ACCTAGGATACCCCAGATATAAGATACCACTTGTCCAACGTTTGAAATTC
TACAAAAAGGAAGATCATAGTGGGGACACTTTTCCCTTTTCTATAAATGG
GAACCAAATTCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_p19.b1 MSMg01no423_p19.b1 CHROMAT_FILE:
MSMg01no423_p19.b1 PHD_FILE: MSMg01no423_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:48 2005
         (543 letters)



>mm_chr11_27218480_27219422
          Length = 943

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 23  caagctggagatgaccaccagtccagtgcagcacaggtctgggtagggcatgcccaagat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caagctggagatgaccaccagtccagtgcagcacaggtctgggtagggcatgcccaagat 296

                                                                       
Query: 83  gatccctgctcagtgccataatgtatgcattgcaagacaaatcctgagatgtcatcagat 142
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 295 gatccctgctcagtgctataatgtatgcattgcgagacaaatcctgagatgtcatcagat 236

                                                                       
Query: 143 tctcagagactctgggcagcactaagagaagcaagtaagtggtggagaaatggaaaagaa 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tctcagagactctgggcagcactaagagaagcaagtaagtggtggagaaatggaaaagaa 176

                                                                       
Query: 203 ggaggaacatggatgtgggcacaatgaagagaacaatgacatttcatttctcaatgaaga 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ggaggaacatggatgtgggcacaatgaagagaacaatgacatttcatttctcaatgaaga 116

                                                                       
Query: 263 gactggacatttgaggatagtgaggaatagccagatatgtatagccagtgatgccacctt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gactggacatttgaggatagtgaggaatagccagatatgtatagccagtgatgccacctt 56

                                                                  
Query: 323 ggatcatggtggggttctggcctgtgctgccaccagggcctacatctggatctgt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 55  ggatcatggtggggttctggcctgtgctgccaccagggcctacatctgggtctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)