BAC Information

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BAC

Clone NameMSMg01-424K22
Chromosome11 (Build37)
Map Location 113,893,868 - 113,894,325
singlet/doubletsinglet
Overlap geneSdk2
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4
Downstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424K22.T7 (MSMg01no424_k22.b1)MSMg01-424K22.TJ (MSMg01no424_k22.g1)
ACCAG518544AG518545
length760843
length of high quality
(start - end)
458 (66 - 523)180 (76 - 255)
definitionCHROMAT_FILE: MSMg01no424_k22.b1 PHD_FILE: MSMg01no424_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:42 2005CHROMAT_FILE: MSMg01no424_k22.g1 PHD_FILE: MSMg01no424_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAAT
TCTGTATGTGGCGTTCACAGATCACTTTGACCAAGCCTCATAGGAAGGGT
ATGGGTAAGTGGCGATGTCACTTCCAGGAGGTGTGCAGGGAAGGCACCAG
CACAGGAAAGAGGTGACAGATGACAGATGAGAGATTGTATGCTGACAGCA
GAGACCCTGGGAAGTAAGGCAAAGGCCCAGGTGACAGGGCACATGAGCAG
GCATAAGGGCTGGCTGGCTGGCTGGGTGAAGGCTCTCTGGAGAGCTGCCT
TTGACCATGGAATTGTTTAGCAGACATGGAGGAGAGGCTGTCTGGAGGCT
GGAGGAGATGAGATCCCACAGAAGGTATCTTTCACCTTTTGGGAAGGACC
ATCACTAATAGTTTGTAGTTCTCATTTTGGATTTTCCTATGTGTTGGCTT
GACATCACCCTATGGAGGTCTTCCCTGTTACACAATGCCTTATACACTTA
TATGCACTAACTGTGTCCCTCAGNAACTTCACACACGAGCTAACAGGTCA
CATTCATCCTTACACCACCTGCCCTTCCACGTATGCTCGAAGTGACCTCA
CGGTATGAACTGCTTTGGACATCTCTTCCCTCAACCTCTAATGCTTCCCT
CGCGAACTCCCCAAGTCTGATAAATCTTAAACCCTACTTTCTTGCGCGGC
CACGCGAGACCTCCAACTACTGGTGGCATTCGTCTTTTTCCCTTCCTGGC
GTTTTTAAGG
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGAACTTTGGAGAGGGTATAAAT
TCAAGAGTCCCCACGTGGGGGTGGGGTGGGGGCAGGGTTCCTGCTCCTGT
TGGTTCCTGATGTGGCTTGTTGGGTGGTTGTGAGCAAAGAGACAAGAAGT
TGGGGGTAGTTTGAAGATTAAGATTAGACTTGCCCCCAGGAACCCAATGC
CTCTAAGCATCAGGACGCAGTCTAAAGAGGTTTGTGCCCCCTTTCCATTC
TAAGCTTCTTTCTTTACTACCTTTTATTGTGGGTTGGAATGGATCTATTC
TTATTATTTTTTTCTTTCCCTATCTTTTTCTCCTCCTCTCTTCTTTTTCT
CTCTTTTCTCTTTCTTTTTTTATTCTTTTTCTTTTCTTTTTATACTTCAT
TATTGCCCCTTTTTCTTATTTCTTCTCCCTTACTCTTTTTTACTCCCACC
TTTTTTTACTTCTCTTTTTTTATTCTTTTTCTTTTTTCTTTCCCTTCTTC
TTTTTCTCCCTTTTACTCCCCTTTTTTTCATTCCCATTTTCTTTTCTCAC
TTCATCACTTTACTCTCTACCTTTTTTTTTCCCTNTTTTCTCTTTTTCAT
TTTTAATTTTCTTCCTCTTTTCTAAATTTCCTTTTTTTATTCCCCCCCCC
CCCTTTTTTCTCCACGTTTTTCTTTTTTTTAACCCCCCCACCTTTCCTTT
CTCTTTTTCTCTTCCTTCCTTCAGTCCTTCATATTTTTTTTCTTACTTTA
AATCTCCCCATTTCCCCCACACATTCTCTTTTTTCTTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_k22.b1 MSMg01no424_k22.b1 CHROMAT_FILE:
MSMg01no424_k22.b1 PHD_FILE: MSMg01no424_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:42 2005
         (458 letters)



>mm_chr11_113893668_113894525
          Length = 858

 Score =  808 bits (418), Expect = 0.0
 Identities = 448/458 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagatcactttgaccaagcctcataggaagggtatgggtaagtggcgatgtcacttcc 60
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 201 cacagatcactttgaccaagcctcaaaggaaggctatgggtaagtggcgatgtcacttcc 260

                                                                       
Query: 61  aggaggtgtgcagggaaggcaccagcacaggaaagaggtgacagatgacagatgagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaggtgtgcagggaaggcaccagcacaggaaagaggtgacagatgacagatgagagat 320

                                                                       
Query: 121 tgtatgctgacagcagagaccctgggaagtaaggcaaaggcccaggtgacagggcacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatgctgacagcagagaccctgggaagtaaggcaaaggcccaggtgacagggcacatg 380

                                                                       
Query: 181 agcaggcataagggctggctggctggctgggtgaaggctctctggagagctgcctttgac 240
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaggtgtaagggctggctggctggctgggtgaaggctctctggagagctgcctttgac 440

                                                                       
Query: 241 catggaattgtttagcagacatggaggagaggctgtctggaggctggaggagatgagatc 300
           |||||||  |   ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 catggaagaggggagcagacatggaggagaggctgtctggaggctggaggagatgagacc 500

                                                                       
Query: 301 ccacagaaggtatctttcaccttttgggaaggaccatcactaatagtttgtagttctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacagaaggtatctttcaccttttgggaaggaccatcactaatagtttgtagttctcat 560

                                                                       
Query: 361 tttggattttcctatgtgttggcttgacatcaccctatggaggtcttccctgttacacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttggattttcctatgtgttggcttgacatcaccctatggaggtcttccctgttacacaa 620

                                                 
Query: 421 tgccttatacacttatatgcactaactgtgtccctcag 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccttatacacttatatgcactaactgtgtccctcag 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)