BAC Information

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BAC

Clone NameMSMg01-425E01
Chromosome11 (Build37)
Map Location 69,795,566 - 69,795,962
singlet/doubletsinglet
Overlap geneDullard
Upstream genePfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12
Downstream geneGabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425E01.T7 (MSMg01no425_e01.b1)MSMg01-425E01.TJ (MSMg01no425_e01.g1)
ACCAG518979AG518980
length709730
length of high quality
(start - end)		480 (48 - 527)397 (73 - 469)
definitionCHROMAT_FILE: MSMg01no425_e01.b1 PHD_FILE: MSMg01no425_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:25 2005CHROMAT_FILE: MSMg01no425_e01.g1 PHD_FILE: MSMg01no425_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGACCACCCAGTACCTTCCCCCTTCAAAAAGGACTTTCCAAA
CTGTACTAGCAAGCCAAGTGCAGAGCCAGATAAGGAAGCTGGCTGACTAA
ACAAATGTAAAAACATAGTTTTAGTAGTCAAAATGACTGAGCCTACAAGC
TGCCAAAACAATATTAGCTGTTCTCAGAGAAATAACCATAACAAGATTAG
CAATCCCCCTGCCCCGTCTCACACTAAATTCTGAGAAAAAAACCACAAAC
CGCCCTGACCTTGCTAGGATTCCCTGTGACGTTAATAGCTGTGACTAATC
CATAAGTTCAAAATGTACTACTGCTTTCCTGACCAAATCATAATAACCTA
CCATGGGGGCAGGTAGAGTGAGAGACTAAGCCAAAGAGTTACTTAGTCAC
TATACAAACCAACCAATGCCTGAAAGGGTTACTTGCTACACCAATAAGAA
CCCTGTTGCTCANATCTGCTCCTTACAAAGGTATTAAAAAGTGTGTTCTT
TCTTTGTTCTGGGTCTCTCCTCTGGCCTGCATGCTGAGAGGGGAGTCCCC
CACATGTTGGATCATAAAAATCCTCATGCTGTTTTCAGTGATGGCGGTCT
CTGCGGGCTTTTGTGAGTGAGGGTCTTTTGACGAAATCCATCATGATCTG
GATGTACCN

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTAGCTTGTGTGTATGGGCTTATTATT
AAGACCCTGGGACAGAAAACGATGCTTTTCCAATAGGCATCTTTACTTGT
CAGATGCACATTAAAGTTGGGTGTCTCATTAGACAAGCTGGCTGTTAGCT
GGAGAGCTTGCATCTGAAGGTGGGCATGTTTCTCCAGGCGACTCTAGCGA
TTATGAAGGGATACTTGGAGTGTAGAGACTGTTTGGATGAACCCAGGCAT
CTCTGGGTTCTCTCCCTCAAGCTTTTCTCCAAGGTAAACATTGTTTCAGC
TACCATTCCTCCCCGCCGCCCCTGCCCCCAGCCCTGGCTGTCCTGGAACT
CACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCACCTGCCTCTGC
CTCCCCAGTGCTGGTATCACAGGCATGCGCCATCACGCCTGGCTTACCAT
CACTTCTTAATGAACATGCCCTCTGGAGCAAATCTCCTGAAGTCATATTC
TGGGGGCAAATGACTGAGTACCTTGTATGCTTTGGCAGCCCACGTCACAA
TTCCCCCAAGGATCTTGTTGGCTCTGCTACAATATGCGCATCGGCTCTTT
CTTGTTTTCTCTTCACCTTCTTTTGTCACAACCCTACCTCTTTCCGTCTT
TAAGGTTGCGTTTATTTTTTTGCACCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_e01.g1 MSMg01no425_e01.g1 CHROMAT_FILE:
MSMg01no425_e01.g1 PHD_FILE: MSMg01no425_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:25 2005
         (397 letters)



>mm_chr11_69795366_69796162
          Length = 797

 Score =  745 bits (385), Expect = 0.0
 Identities = 394/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagcttgtgtgtatgggcttattattaagaccctgggacagaaaacgatgcttttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagcttgtgtgtatgggcttattattaagaccctgggacagaaaacgatgcttttcca 260

                                                                       
Query: 61  ataggcatctttacttgtcagatgcacattaaagttgggtgtctcattagacaagctggc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggcatctttagttgtcagatgcacattaaagttgggtgtctcattagacaagctggc 320

                                                                       
Query: 121 tgttagctggagagcttgcatctgaaggtgggcatgtttctccaggcgactctagcgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttagctggagagcttgcatctgaaggtgggcatgtttctccaggcgactctagcgatt 380

                                                                       
Query: 181 atgaagggatacttggagtgtagagactgtttggatgaacccaggcatctctgggttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 atgaagggatacttggagtgtagagactgtttggatgaacccaggtatctctgggttctc 440

                                                                       
Query: 241 tccctcaagcttttctccaaggtaaacattgtttcagctaccattcctccccgccgcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccctcaagcttttctccaaggtaaacattgtttcagctaccattcctccccgccgcccc 500

                                                                       
Query: 301 tgcccccagccctggctgtcctggaactcactttgtagaccaggctggtctcgaactcag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgcccccagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcag 560

                                                
Query: 361 aaatccacctgcctctgcctccccagtgctggtatca 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatccacctgcctctgcctccccagtgctggtatca 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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