BAC Information

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BAC

Clone NameMSMg01-426M11
Chromosome11 (Build37)
Map Location 90,456,492 - 90,456,995
singlet/doubletsinglet
Overlap geneStxbp4
Upstream genePctp, Tmem100, LOC100039104, Mmd, Hlf
Downstream geneLOC100039267, Cox11, Tom1l1, LOC638903, EG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M11.T7 (MSMg01no426_m11.b1)MSMg01-426M11.TJ (MSMg01no426_m11.g1)
ACCAG520136AG520137
length880788
length of high quality
(start - end)
39 (71 - 109)504 (69 - 572)
definitionCHROMAT_FILE: MSMg01no426_m11.b1 PHD_FILE: MSMg01no426_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:26 2005CHROMAT_FILE: MSMg01no426_m11.g1 PHD_FILE: MSMg01no426_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGAAATTGCGGCGCTAAACGACTCACAAATCGTGAGGGGCGCGGAATT
CTTAACAATTTCAGAGAAGTAAAAACTTCCATGTGAGAGCTGGTGGGGGG
GGGGGGGATGACTTTTCCCCTCNTTTTTGACTCCACCGTTCTCTCTTATT
TTCCCATTTTCACGCCCGCGGGACGACAATAAACACCTCCCACCTCACAT
GAACTATACGTCACTAACTCTACACCTTACCAACTACCCAATCAACTACT
CAAACCATCTCTTTTCCCAATATACATCGTAAAAATCACCAAAACAGACG
ACGTACATATTACCACCCGCGCACCAAACCAGCTTTTTCTCTTTTCCACC
ACCCCCACCCACAGCGATACATATCCTCTCTTTATCTCCACCCTACGCCC
CAAAGACAGAGCATAATCTATTTTCCCCTATAATTCCAATACCACCTCCC
CCATCCGCTATTTACATTTCACATCACATCCCTCTCATAAAATTAACACA
ACCTCGATATATTAGACACTTGATAACAATTCAGTGAGGGTATTTCTATA
ACCATACGCACCAAACCAGACAGCACATTCCCTAACGCAAACTACAAATA
TACCAATCATTCAATTCTCTCACACACACCCCTGATCTCCTAAAACACCG
CGACACCCACCCTCACATAAATAGAACTTAATCTGTATACGCTTCTATTT
CTTGTAGATCCTGATCCACATTTCCTAATATTATAACTTACCCGCAGATC
AACTACAATACCGCATCGTTACCAACAAAAACACATCCTTATGTTTAATT
CTCGCTTATTACCCACACTACACTTCCTTACTCTTCCCCTCCCCACCCTA
CTCTCAATAATTTTACGCTACTCCGTCCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAATTTATAGATAACATGAGGAAAAAAAAAAG
AAATGTGAAAAATACTTGGTTGCTATCTTGAGAGTATAAATGAAGTTGAC
AGAATTAGGTTAAATGGAAAATATTCTTAATTTTGGCTGGTTTAGGGCTA
CACTTACTTACACTACTGGAAAAATAAAGAAAAGTTTTCCCTAACACTCA
TTTCTGTCAGGCTCTTTTCTTTGGATGAAGTCACTTCTGCCTTTCAAACA
GAGATGGAGATGCTCCCACTTGTACTCCACTGTCCTTCCCGTGTTCTATA
GCCTTAGACAGAACACTCGTAATTTTCAGCCAAAAGGCATTTGAAGCCCA
CTTTGCCCCTGATGAGGTCCTGGGGCTATGTGCTAGCCAATGCGGAAGTG
CTGGAGAACATTCAGGAAGTCTCCTATCAGAAGAACAAGCACTTTTCCTC
CTTGTCTTAATAAAAGGGGAGAAAGGAAAGAGAAGACATAATCAGCCACC
TTGACTCACAAGGACCCTCAACAATGTTGGTGGAAGAGTCTACAAGGAAC
CTCAATAATGATGGTGGAAAACCGGGCGTGGTGGTGCACACCTTTAATTC
CACACCTGGGAAGCAGAGGCAGGCGGATTTCTGAGTTTGAAGCCCGCCTA
TTTTACCGGACACCATGGGTTTTAGAAACCCTGGCTTTGTAACCCCCNTT
TTATATCAATAAATCACATAATTCGATATCCTTTCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m11.g1 MSMg01no426_m11.g1 CHROMAT_FILE:
MSMg01no426_m11.g1 PHD_FILE: MSMg01no426_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:26 2005
         (504 letters)



>mm_chr11_90456292_90457195
          Length = 904

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttatagataacatgaggaaaaaaaaaagaaatgtgaaaaatacttggttgctatct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aaatttatagataacatgaggaaaaaaaaaagaaacgtgaaaaatacttggttgctatct 260

                                                                       
Query: 61  tgagagtataaatgaagttgacagaattaggttaaatggaaaatattcttaattttggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagtataaatgaagttgacagaattaggttaaatggaaaatattcttaattttggct 320

                                                                       
Query: 121 ggtttagggctacacttacttacactactggaaaaataaagaaaagttttccctaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttagggctacacttacttacactactggaaaaataaagaaaagttttccctaacact 380

                                                                       
Query: 181 catttctgtcaggctcttttctttggatgaagtcacttctgcctttcaaacagagatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttctgtcaggctcttttctttggatgaagtcacttctgcctttcaaacagagatgga 440

                                                                       
Query: 241 gatgctcccacttgtactccactgtccttcccgtgttctatagccttagacagaacactc 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gatgctcccacttgtactccactgtctttcccgtgttctatagccttagacagaacactc 500

                                                                       
Query: 301 gtaattttcagccaaaaggcatttgaagcccactttgcccctgatgaggtcctggggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaattttcagccaaaaggcatttgaagcccactttgcccctgatgaggtcctggggcta 560

                                                                       
Query: 361 tgtgctagccaatgcggaagtgctggagaacattcaggaagtctcctatcagaagaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgctagccaatgcggaagtgctggagaacattcaggaagtctcctatcagaagaacaa 620

                                                                       
Query: 421 gcacttttcctccttgtcttaataaaaggggagaaaggaaagagaagacataatcagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacttttcctccttgtcttaataaaaggggagaaaggaaagagaagacataatcagcca 680

                                   
Query: 481 ccttgactcacaaggaccctcaac 504
           ||||||||||||||||||||||||
Sbjct: 681 ccttgactcacaaggaccctcaac 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)