Query= MSMg01no427_l11.b1 MSMg01no427_l11.b1 CHROMAT_FILE:
MSMg01no427_l11.b1 PHD_FILE: MSMg01no427_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:39 2005
(589 letters)
>mm_chr11_85284708_85285697
Length = 990
Score = 1079 bits (558), Expect = 0.0
Identities = 576/582 (98%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 9 tcattacatctaccctcatttctatatacccacaacaaaacattttcttaatgaatgcag 68
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tcattacatcgagcctcatttctatatacccacaacaaaacattttcttaatgaatgcag 731
Query: 69 ggcccttcccagaacaaaaaagaaaaaacaaaaacaaaaaaattaaatcctctagcaaca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggcccttcccagaacaaaaaagaaaaaacaaaaacaaaaaaattaaatcctctagcaaca 671
Query: 129 aagtactaaactgcagccccagtaggtcactaaaagtgatgtacagccagatccactagt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aagtactaaactgcagccccagtaggtcactaaaagtgatgtacagccagatccactagt 611
Query: 189 acagacagttgagttcaagaa-tcaacattcaaaacagtatccctttgttaaatgcaggg 247
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acagacagttgagttcaataattcaacattcaaaacagtatccctttgttaaatgcaggg 551
Query: 248 gggcggagggacactcatgagtctgcctaattactgtctttctatataagaaaagtagaa 307
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggacggagggacactcatgagtctgcctaattactgtctttctatataagaaaagtagaa 491
Query: 308 atataaacatacagtgctgtaagtgtaaagacatttccttactctgctttggactggaaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atataaacatacagtgctgtaagtgtaaagacatttccttactctgctttggactggaaa 431
Query: 368 gtatgtaacggttctcatcgagcccagggacatattctaatgcacatcatgcaagcattt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtatgtaacggttctcatcgagcccagggacatattctaatgcacatcatgcaagcattt 371
Query: 428 gtgacaatcttgaagtatttttgtatttaacatgaaacagtgtgacctttgattccttct 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgacaatcttgaagtatttttgtatttaacatgaaacagtgtgacctttgattccttct 311
Query: 488 ctgtggtcgacttagactgttgtcccctgagcagttgtgcttttgattacatgctgtcat 547
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 310 ctgtggtcgacttagactgttgtcccccgagcagttgtgcttttgattacatgctgtcat 251
Query: 548 tcagattcactctgtcatccctattattagaattgctctgtt 589
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcagattcactctgtcatccctattattagaattgctctgtt 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_l11.g1 MSMg01no427_l11.g1 CHROMAT_FILE:
MSMg01no427_l11.g1 PHD_FILE: MSMg01no427_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:39 2005
(471 letters)
>mm_chr11_85124735_85125605
Length = 871
Score = 903 bits (467), Expect = 0.0
Identities = 470/471 (99%)
Strand = Plus / Plus
Query: 1 gcgggctgcgtgggaacggcgggatcccgggcagccggccatggcggggctgtactcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgggctgcgtgggaacggcgggatcccgggcagccggccatggcggggctgtactcgct 260
Query: 61 gggagtgagcgtcttctcggaccagggcgggaggaagtacatggaggacgtaactcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagtgagcgtcttctcggaccagggcgggaggaagtacatggaggacgtaactcagat 320
Query: 121 cgtggtggagcccgagccggctgcggaggacaagccggcgccggtaccgcggcgggcgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtggtggagcccgagccggctgcggaggacaagccggcgccggtaccgcggcgggcgct 380
Query: 181 cgggttgccggcgacccccactctcgccggcgtcgggccatcgggaaaaggcccggcggc 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cgggttgccggcgacccccactctcgccggcgtcgggccatcggaaaaaggcccggcggc 440
Query: 241 ggcccgcgaccctgccccggacgccgcggcctcgctacccgctggccgctgctgtcgccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcccgcgaccctgccccggacgccgcggcctcgctacccgctggccgctgctgtcgccg 500
Query: 301 ccgctcttcggtggccttctttgcagtgtgcgacgggcacggcggtcgggaggcggcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgctcttcggtggccttctttgcagtgtgcgacgggcacggcggtcgggaggcggcaca 560
Query: 361 gtttgcccgggagcacttgtggggtttcatcaagaagcagaaaggcttcacctcgtccga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttgcccgggagcacttgtggggtttcatcaagaagcagaaaggcttcacctcgtccga 620
Query: 421 gcccgccaaggtgtgcgctgccatccgcaaaggtttcctcgcctgtcacct 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccgccaaggtgtgcgctgccatccgcaaaggtttcctcgcctgtcacct 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
