BAC Information

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BAC

Clone NameMSMg01-428D06
Chromosome11 (Build37)
Map Location 12,544,922 - 12,545,148
singlet/doubletsinglet
Overlap genenone
Upstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D06.T7 (MSMg01no428_d06.b1)MSMg01-428D06.TJ (MSMg01no428_d06.g1)
ACCAG521223AG521224
length738754
length of high quality
(start - end)
227 (331 - 557)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no428_d06.b1 PHD_FILE: MSMg01no428_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:19 2005CHROMAT_FILE: MSMg01no428_d06.g1 PHD_FILE: MSMg01no428_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCTACTCTTATGCTTGGAACCAGAATTATTATACAGTATACACA
CATTTATACCACTGAACACCAGGGCAGTAGACATCCTCTACTACGTTTCA
CTTTCGGCTTTGACTGGGGAAACAGAAAGGGAAATTGTTCTGTCCTTTCA
ACATTTTCATTAATGAGCTGTCCAAGTCACCATTGCAGAAATGACTATTA
ATTGGTTTTATTTAATAACCTTCTGAGTTATCTGCTGGTGGGACAAAGAG
CTTTCCTTCAAGGTCATAGGGTAACATCCTTTAAAACGTTTTGCCAAGAA
AAAAACATAGAGTATTTTGTCCTAATTACCAAAATTACTATAATTCACAG
AATAATCTGAAACAGCTGGTTATCTGTTTAGGAGACAATTTCACACCATC
ACATAAAACCAGGGTGCCAAGATCTCTGCATCTGTACTGACCCAGGGTTG
GAACAGCTAGCAGACTGCCATCTATGCAGGATCCAGCCAACCAGTGCCAA
TTTGTGTACCTCACAGCGGGAATGCTTCAGACTTCTAATCAGCGAAACTG
CAAAGTAATTTTCAAGATCTTTCTATGAAATTTTTCACTTTTTTCTATAA
CCAGGGTATTTTATGTATTATTTTCCCATGCCTTAAATCCAAGGATTCTC
GCCTCTCTTTATCTCTTCCCCCACCACATATTATACCT
NCCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCAGCTCAAGGA
CTTTCTAGGATGTTGGAACACTGGTGAAGGCTTAGCTATGTCAGAATTCA
ATCTTAAAAGGCACTTATAATAAGATAATATTAAAAGAGAGCACATGGAT
ACATACACCAGACTAATGCGGGAATAGGGTTTGAGTAAAGAAAATGCCAG
ACTCCAGGAGGTGAGTTTCCTTGAAACTCTCTGCCTTGTGAGTGCCTTCC
AGGCCTCTTGGCCTGTCAAGCTGTATCTCTACTGGAGTGGGTGGCAATAC
TTACTCTGTGTGGTAGTTTGAATATACTTGCCCCAGGGAGTGGCGCTATT
AGGAGGTATGGCCTTGGTGGAGGAAATGTGTCACTGTGGGCATGGTCCTT
AGGAACTTCTTCCTAGCTGCCTAGCTGTCTTCCCCTCATGACCTTCAGAT
GAAGATGCAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTAGACACTA
GACCAGTTTTCCTATCTATGGGAAACTGTGGAGACCCTCTGCTCCAAGAT
GTTACATTCTCCATCCCACTCCGAACGTTTTTCCCAGAGAATTTTGTTTC
CCTCAATCTTTTCTTTTATAGAGATATCCGCCTGTTTTTACCCCGGATTT
CCCACTTTTTTGCCCTTCACCCATTTTCCCCTTTTGCCTCTCCGTGGCGG
GACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d06.b1 MSMg01no428_d06.b1 CHROMAT_FILE:
MSMg01no428_d06.b1 PHD_FILE: MSMg01no428_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:19 2005
         (227 letters)



>mm_chr11_12544722_12545348
          Length = 627

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaacgttttgccaagaaaaaaacatagagtattttgtcctaattaccaaaattacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 427 ttaaaacgttttgccaagaaaaaaacatagagtattttgtcctaattaccaaaattactg 368

                                                                       
Query: 61  taattcacagaataatctgaaacagctggttatctgtttaggagacaatttcacaccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taattcacagaataatctgaaacagctggttatctgtttaggagacaatttcacaccatc 308

                                                                       
Query: 121 acataaaaccagggtgccaagatctctgcatctgtactgacccagggttggaacagctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acataaaaccagggtgccaagatctctgcatctgtactgacccagggttggaacagctag 248

                                                          
Query: 181 cagactgccatctatgcaggatccagccaaccagtgccaatttgtgt 227
            |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 247 tagactgccatctatgcaggatccagccagccagtgccaatttgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)