BAC Information

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BAC

Clone NameMSMg01-428F02
Chromosome11 (Build37)
Map Location 51,714,163 - 51,714,605
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15
Downstream geneD11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428F02.T7 (MSMg01no428_f02.b1)MSMg01-428F02.TJ (MSMg01no428_f02.g1)
ACCAG521311AG521312
length822750
length of high quality
(start - end)
44 (78 - 121)517 (79 - 595)
definitionCHROMAT_FILE: MSMg01no428_f02.b1 PHD_FILE: MSMg01no428_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:28 2005CHROMAT_FILE: MSMg01no428_f02.g1 PHD_FILE: MSMg01no428_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCGTAACGAGCCG
CGGAATTCCAGAACAGTTCGAAACAACACAGAGAAACCCTGCCTCAAGGG
GAGGGAGGGAGGGAGGGAGGTAGGTACCCNCTCTTCTCCTTTCCTCTCCC
CCTCCTCGTTTTTTTTTCCCTCGGGGCGGCGCTGTTTTTCCTTGTGTTTG
CCTCCCGTGCCTCCCCCTTTGCTGTTGTTTTTCCCCCTGCTCTCCCCCTT
TTTTTTTTTGCGNTCTTTCCTGCTTTTCGTTGTTGTCCCTCTCCGTCTCG
TGCCGCCCCCCGGCGCCTTTGGGTAGGTTTCCGCCCCGGCGGCCGGCTGC
GGCCGCCCGCGTTTTTTTTCCTCCCCCCCTCCGCCCGGCGGGGCGGTTCT
TCTTTTCCTCCTCCTTCCCGTTCTCCCCCCCCTCTTTTTTTACCTCCGCC
TCTCTCTTTTCATCTTCCCTTTTCTTTCTTGCTCCGCATCATGATCCTAC
CACCAAACACTTAAACAAAACACTTCAAATTCACTATTTCAAACTTTAAA
TATTTAACGAATTCTAACCTTCTATTATCTTCCTCCCACAATTCTACCCA
ATTTCANTTCCTAAGCAACCCATGCTCACCATATAATTTCCCCCACTAAA
TTTACTTTTCCTTCATAACCACACCCTATACTTTACATTACAACAAAAAA
CAAAATATCCTCAATTCCCTCTTCTTTTGTCTCAAATTAACTATTTATTC
ACACCTAATATTTATCTCTATTAAACCCCCAACCTATTTCATTATTCCCC
ATACCCCTATATTAAAATTTAC
NGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATTGGTCCTCTGAAAGAGC
AAGCGCTCTGGATGCTGGGACATCTCTCCAGCTTTTGGTTTTGATTTTGA
GCAGACTCTCATATAATCCAGGCTGACCTCACACTTGCTAGGCTGTTAAG
GATGTCCTTGAATTCCTGATGATCCTGCCTCGACCTCCTGAGTACTGGGA
TTACAGCTGTGCACCACGCCCTATTTTACTTAGTGATGAGAATCCAGCCC
AAGGCTTATCTGTGCAGGTCAAGGGTTCTACCAGCTGAGCTGCATCTCCA
GCTGAACGCTAGCTTTTAAATCCACCTGCACCAGGTTTTGAAAACCTAGA
TTTATTTAATCATTTAACCCATTGTGTCCCTCAGACCCAAACTGCACTCT
TTAATCTCTATATTTTGATGGCAAACTTTTACTATATGCAGATAAACAAA
TGTGGTACTGTGTGTACAAGTCTACTTCTGGATATTTCTCTCTCACTGTG
GTATTTGTGGTCTAGTATTAGGATCAGCTCTGTGAAGCACTGAATGGTAG
GACTCTGGGTTCATTCCCTCTCCCCCAATAAATAAATTCTCTACCTGGAG
GAAGCAGAGCCACATCTTGCTTTAAGCAAGAACTGTTTCAGAACCCCCAC
CCCCTTTCAACCGGGAGGAAGTGGGCCGTCCCCGACCTCTGGTCCTCCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_f02.g1 MSMg01no428_f02.g1 CHROMAT_FILE:
MSMg01no428_f02.g1 PHD_FILE: MSMg01no428_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (517 letters)



>mm_chr11_51713689_51714605
          Length = 917

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 75  agactctcatataatccaggctgacctcacacttgctaggctgttaaggatgtccttgaa 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 agactctcatataatccaggctgacctcacacttgctaggctgttaaggatgtccttgaa 858

                                                                       
Query: 135 ttcctgatgatcctgcctcgacctcctgagtactgggattacagctgtgcaccacgccct 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ttcctgatgatcctgcctcgacctcctgagtactgggattacagctgtgcaccacgccct 798

                                                                       
Query: 195 attttacttagtgatgagaatccagcccaaggcttatctgtgcaggtcaagggttctacc 254
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 797 attttacttagtgatgagaatccagcccaaggcttatgtgtgcaggtcaagggttctacc 738

                                                                       
Query: 255 agctgagctgcatctccagctgaacgctagcttttaaatccacctgcaccaggttttgaa 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agctgagctgcatctccagctgaacgctagcttttaaatccacctgcaccaggttttgaa 678

                                                                       
Query: 315 aacctagatttatttaatcatttaacccattgtgtccctcagacccaaactgcactcttt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aacctagatttatttaatcatttaacccattgtgtccctcagacccaaactgcactcttt 618

                                                                       
Query: 375 aatctctatattttgatggcaaacttttactatatgcagataaacaaatgtggtactgtg 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatctctatattttgatggcaaacttttactatatgcagataaacaaatgtggtactgtg 558

                                                                       
Query: 435 tgtacaagtctacttctggatatttctctctcactgtggtatttgtggtctagtattagg 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtacaagtctacttctggatatttctctctcactgtggtatttgtggtctagtattagg 498

                                  
Query: 495 atcagctctgtgaagcactgaat 517
           |||||||||||||||||||||||
Sbjct: 497 atcagctctgtgaagcactgaat 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)