BAC Information

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BAC

Clone NameMSMg01-431E19
Chromosome11 (Build37)
Map Location 92,846,484 - 92,846,998
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545
Downstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431E19.T7 (MSMg01no431_e19.b1)MSMg01-431E19.TJ (MSMg01no431_e19.g1)
ACCAG523590AG523591
length769779
length of high quality
(start - end)		519 (35 - 553)43 (64 - 106)
definitionCHROMAT_FILE: MSMg01no431_e19.b1 PHD_FILE: MSMg01no431_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:33 2005CHROMAT_FILE: MSMg01no431_e19.g1 PHD_FILE: MSMg01no431_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAAA
ACATATCGTTCTTTATTAACTAAAAAGGACCTTTTGACTCTCAAAAAACC
CATAAAATTTAAAAGAGAAATAATAATGCAAGTAGCCATTGCAGTAAGTT
TAAAAGTGAATCACCAGTCAGCCTTTTGGGAGGAGGTTGGAGAAACATTC
TGTTCATTTTTGTCTTCCACAGAACAATGCGTAGGTAGTAAACCATTACA
TGCATGGTTTGCAGAAGGACAGCAGAAGTGCTGCATAATTTTAACATTCC
ACTGGCCTTTTCCAATCTATATCATCAATGTTCTATCCAAGCATGAAAGC
TGGGAACTCAGCTTTCTCAACTTAAAGAAAACACAAGGTCTCACCTTGTG
CCTTTCTGGTTCTCTCATACAGTGCTGGGATGTCAAAGGTAAAATAGATG
TCTCTCTTTCTTCTTGGATTCAATGTTCATTCTTAATTCTAGAGTGATAG
AATCTGCTTCTTGGAAGGTATGATGAATGGAGTATGTGTGCTTCTCTAAA
TTTCTGTCTGAGAGACGTGCTGCAAGAAGAGATTGCTGGCTGTCAGAATA
AAAAGTTGTGCTTTCTGTCCCCATGAAAACTTTACCACCTCCCGCCCAAT
CCAGAACAACAAAACCCGGTTTTATAAAGCCCTACGAAAGAAGGGGAAAA
CGCTTGGTGGTCTGTTCTAAAAATTAAATACAAAACCCGGAACGCCCCAT
TTGTTAGGGCCTTTAAAAG

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCATGGTTGCCTTAGCAGCATCATGTAAGTCTGACTAGAA
TTTTCAACCTAGATAGAGATAGAGATCGACGTGGAGGTGGAGGTGNNANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNNNNTTTTTTTTTTNTTTT
TTTTTNTTTTTTTTTTGTTTTTTCTGTTTTTNNTTTNTTTTTTTTTNTTT
TTTTTTTTTTTTTTNNCCNNNNNTCTNNCTNNTCCCCCCTTTTTCTTCTT
CCCTCCCCCCNNNCCCCCCCCCCCCTCCCCTTTTTTCTTTCTCCCCCCCC
CCCCCCCCCCCCCCTTTCCTTTCCCCCCCCCCCCCCCCCTCTCTTTCCCC
CCCCCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCCCCCCCCTCTCCCTC
CCTTCCCCCCCCCCCCCCCCCCCCTTTCCCCCTCCTCCCCCCTCTCCCCC
CCTTCCCCCCCCCCCCCTCCCCTCCCCCCCCCCCCCCCTCCCTCCCCCTT
CCCCCCCCCCCCCCTCCCCCTTCTCCCCCTTCTCCCCCCTCCCCCCCCCC
CCCCCCCCCCCCTCCTCCCCCCCCTCTCCCCCCCCCCCCCCCTTTCTCCC
CCCTCTCCCCTTCCCCCCCCCCTCCCCCTCCCCCCCCCTCCTCCCCCTCC
CCTTCCCCCCTCCCCCCCCCCCCTCNCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_e19.b1 MSMg01no431_e19.b1 CHROMAT_FILE:
MSMg01no431_e19.b1 PHD_FILE: MSMg01no431_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:33 2005
         (519 letters)



>mm_chr11_92846280_92847198
          Length = 919

 Score =  911 bits (471), Expect = 0.0
 Identities = 504/515 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaaaacatatcgttctttattaactaaaaaggaccttttgactctcaaaaaa 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaaaacaaatagttctttattaactaaaaaggaccttttgactctcaaaaaa 264

                                                                       
Query: 65  cccataaaatttaaaagagaaataataatgcaagtagccattgcagtaagtttaaaagtg 124
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 cccataagatttaaaagagaaataataatgcaagtagccattgcagtgagtttaaaagtg 324

                                                                       
Query: 125 aatcaccagtcagccttttgggaggaggttggagaaacattctgttcatttttgtcttcc 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 aatcaccagtcagccttttgggaggaggttggagaagcattctgttcatttttgtcttcc 384

                                                                       
Query: 185 acagaacaatgcgtaggtagtaaaccattacatgcatggtttgcagaaggacagcagaag 244
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 385 acagaacaatgcgtaggtagtaaaccgtcacatgcatggtttgcagaaggacagcagaag 444

                                                                       
Query: 245 tgctgcataattttaacattccactggccttttccaatctatatcatcaatgttctatcc 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 tgctgcataattttaacattccactggccttttccaatcaatatcatcaatgttctatcc 504

                                                                       
Query: 305 aagcatgaaagctgggaactcagctttctcaacttaaagaaaacacaaggtctcaccttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagcatgaaagctgggaactcagctttctcaacttaaagaaaacacaaggtctcaccttg 564

                                                                       
Query: 365 tgcctttctggttctctcatacagtgctgggatgtcaaaggtaaaatagatgtctctctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcctttctggttctctcatacagtgctgggatgtcaaaggtaaaatagatgtctctctt 624

                                                                       
Query: 425 tcttcttggattcaatgttcattcttaattctagagtgatagaatctgcttcttggaagg 484
           ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct: 625 tcttcttggattcaatgttcactcttaattctagagtgctagaatctgcctcttggaagg 684

                                              
Query: 485 tatgatgaatggagtatgtgtgcttctctaaattt 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgatgaatggagtatgtgtgcttctctaaattt 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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