BAC Information

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BAC

Clone NameMSMg01-431J23
Chromosome11 (Build37)
Map Location 71,098,533 - 71,098,986
singlet/doubletsinglet
Overlap geneNlrp1c
Upstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431J23.T7 (MSMg01no431_j23.b1)MSMg01-431J23.TJ (MSMg01no431_j23.g1)
ACCAG523838AG523839
length763770
length of high quality
(start - end)		454 (65 - 518)420 (66 - 485)
definitionCHROMAT_FILE: MSMg01no431_j23.b1 PHD_FILE: MSMg01no431_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:01 2005CHROMAT_FILE: MSMg01no431_j23.g1 PHD_FILE: MSMg01no431_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCAGA
GATCTATTCACTCTCATAGCTGGCCTTCAGACTCTCCAAGCAGAGGCTGA
GGCCCTGGGCTCTGGGCCCTGGTTTATATTACAAGGGCCCTATGTCTGCC
ACATACTCCTTAGTGGAGTGAGGCCAGCCCTTATCTTCCCACAACTAAGT
GGTTTGGTGGAATCTGGATTCCACTACTTACCCTACTCTTCTATGGTGCC
CACTGGAGTGTGTGTCCTTGAACAGGGCTCCTCAGGAAGGAAACTGTTCT
CCAAAAGTGAAAAAGACGCTGGCCCATTTTCAAGAAGGCAGGCATCAGAG
AGCCTGCGTAGATGCACTTCCTCTAAACACTGGGAGTAGAAGTTGAACAT
GTTTCAGCTTGTTTTCTGTTAAGTCTCTGCAGATGCCTGGGCTGGAAGAG
TCAGGGTGAGAGCTTCATCTGGATTTGCAGAAGCCCTGCTGGCCTGACTA
CAGGACTCATGTCTGAGCTCAGTTCCCTCTTTCATTAGTGTGGGAACTGA
GGTTTGCCAACAGGGCCCAGGTCAGCAATAGCTCCTGGATTTCCCCCCAA
GGTTGTGCCCTGGAAAACTTTGTTCCCCTCCTTCCCTGGAACCTGCCCCG
AAAAAGGTGTGTCAATCTCTAAATTCCTTTTATGCCACAACCCCGCCTTG
GTTTTTTTGGAAACTATGGGGGGCGGGCTTCCCTCCCTCTCTTTTCTTCC
TTCTCTCCTCCCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAAAGGAGCACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCATGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTAATCAGCTATTAAAAAGAAAGATTTATTGAAATT
CCTAGCCAATTGGATGGACCTGNAGGGCTCCTTCCTGAGTGAGGATAACC
TTTCCCAAGGGACTCCCCCACTATGGACTCCCTGGAAAATGGAAATTAAC
CCCCACCCTAAGTAACCCCCAAAATAAAATAAATTTTCTCAACACACGGA
AACCCCGAAAAATTTAAATTGAAGGGGGGGACCTTTCCCCCCCCCTTAAA
AAGGAAAAAAAACCCCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_j23.b1 MSMg01no431_j23.b1 CHROMAT_FILE:
MSMg01no431_j23.b1 PHD_FILE: MSMg01no431_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:01 2005
         (454 letters)



>mm_chr11_71098333_71099186
          Length = 854

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagctggccttcagactctccaagcagaggctgaggccctgggctctgggccctggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagctggccttcagactctccaagcagaggctgaggccctgggctctgggccctggtt 260

                                                                       
Query: 61  tatattacaagggccctatgtctgccacatactccttagtggagtgaggccagcccttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattacaagggccctatgtctgccacatactccttagtggagtgaggccagcccttat 320

                                                                       
Query: 121 cttcccacaactaagtggtttggtggaatctggattccactacttaccctactcttctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcccacaactaagtggtttggtggaatctggattccactacttaccctactcttctat 380

                                                                       
Query: 181 ggtgcccactggagtgtgtgtccttgaacagggctcctcaggaaggaaactgttctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgcccactggagtgtgtgtccttgaacagggctcctcaggaaggaaactgttctccaa 440

                                                                       
Query: 241 aagtgaaaaagacgctggcccattttcaagaaggcaggcatcagagagcctgcgtagatg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgaaaaagacgctggcccatttacaagaaggcaggcatcagagagcctgcgtagatg 500

                                                                       
Query: 301 cacttcctctaaacactgggagtagaagttgaacatgtttcagcttgttttctgttaagt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 cacttcctctaaacactgggagtagaagttgaacatgtttcagcttgtttcctgttaagt 560

                                                                       
Query: 361 ctctgcagatgcctgggctggaagagtcagggtgagagcttcatctggatttgcagaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgcagatgcctgggctggaagagtcagggtgagagcttcatctggatttgcagaagc 620

                                             
Query: 421 cctgctggcctgactacaggactcatgtctgagc 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgctggcctgactacaggactcatgtctgagc 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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