BAC Information

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BAC

Clone NameMSMg01-432H09
Chromosome11 (Build37)
Map Location 71,228,085 - 71,228,334
singlet/doubletsinglet
Overlap genenone
Upstream geneArrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432H09.T7 (MSMg01no432_h09.b1)MSMg01-432H09.TJ (MSMg01no432_h09.g1)
ACCAG524474AG524475
length841821
length of high quality
(start - end)
250 (67 - 316)250 (71 - 320)
definitionCHROMAT_FILE: MSMg01no432_h09.b1 PHD_FILE: MSMg01no432_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:11 2005CHROMAT_FILE: MSMg01no432_h09.g1 PHD_FILE: MSMg01no432_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACAGAATCCGCGGAATTC
AAGAAGGTTTCCAAAAAACCTTTTCTCCCAGGTATCTGTGGTCACTTGGG
GCTGAGGACCTGTTACCCAGGGTACAGGGACACGGCTGAGGCTATGTAGG
CAATGTGGTCACTGTCGATACAGAGAAGTGACTGGATATTTGTTCAACTA
GGAAAATAAAAGGATCAAGAGAATCGCTCTGAGCACTAGAAATCAATGCA
GAGATATTGTGAGAGCAGTTCCTTGTGTAGTTCCTCAGCACCACACAGTG
TAGGGATTGGTATTTGTTTTTTTTTGATAAGCAGAAGGACACACTTACTA
AGCAGGTTCTCTCATACCCGATAACCGTAACTCTTATCAAGTAATGTAAA
CCTTAGAGCCCCCCCTTCCTCATTTCTTAATAGGGTATATCAGTGCCTTA
CCTCCAAGTCGTATGCCAATCCCCTATGCCTGCCCACTAGTATCCCTTTT
TCGCTCTTCCTGTACTTGGCCCTATCCCCTGTTGTTTGTTCTTTCTGTCC
TTTGCTCCCTTATTACATCTTTTTCCATTCTTTTCCCTTCCTCCTCTCTC
CCTTTTCTCTTCCCTTTTCCTAACCTTCACTTAATATCTTTTCTCCTTCT
ATAACCCATCATCATCTTCTCACTTTATATTTTTTTACTTCTTTTTTCTA
TCCCTCCATTATTCTCTCCTTCCTTCCCCTTCTCCCTTTACCACGTTTCC
TACCTCTCCCTTTCTCTCCCCCATGTTCTTCTATTCATTCCTCGATCTCC
TTTCTCCCTATCTCATCTTTCCCTCCTATACCATTTCATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAACTGTTACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCT
GTATTGAAACCAGATGCCCCTCTACAGAGGAATGGATACTGATTATGGGG
TACTTCTACTCACTGTGACATTTCTTCCCCTTTTATTACAATCGGTTTTT
TGTTTCTCCCAGTCTCTTGTGCGGTTCTTGTAATTTTTTTTCCCTTTTGC
TTTTTCTATTTTCTTCTCTTTATTTTTCCCCTTTCATTTTTCCTCATGTT
TACTGTTTTTATACTTCCTTTTTTCTTCATCTCTTTATCTCCAAATTATC
CTTGCGCCCAATTTCCTATTCTTTTTTTCCCTACTTCTCACCTTTTTTAT
ATCACTTCCCCTCCCTTTTTTCTTTTACTTTCCTTTTCTATTTTCTCTCT
TTGGCTTTTTCTCATTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_h09.b1 MSMg01no432_h09.b1 CHROMAT_FILE:
MSMg01no432_h09.b1 PHD_FILE: MSMg01no432_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:11 2005
         (250 letters)



>mm_chr11_71227885_71228534
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccttttctcccaggtatctgtggtcacttggggctgaggacctgttacccagggtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaccttttctcccaggtatctgtggtcacttggggctgaggacctgttacccagggtaca 391

                                                                       
Query: 61  gggacacggctgaggctatgtaggcaatgtggtcactgtcgatacagagaagtgactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gggacacggctgaggctatgtaggcaatgtggtcactgtcgatacagagaagtgactgga 331

                                                                       
Query: 121 tatttgttcaactaggaaaataaaaggatcaagagaatcgctctgagcactagaaatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatttgttcaactaggaaaataaaaggatcaagagaatcgctctgagcactagaaatcaa 271

                                                                       
Query: 181 tgcagagatattgtgagagcagttccttgtgtagttcctcagcaccacacagtgtaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgcagagatattgtgagagcagttccttgtgtagttcctcagcaccacacagtgtaggga 211

                     
Query: 241 ttggtatttg 250
           ||||||||||
Sbjct: 210 ttggtatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)