BAC Information

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BAC

Clone NameMSMg01-432P04
Chromosome11 (Build37)
Map Location 69,209,034 - 69,357,474
singlet/doubletdoublet
Overlap geneLsmd1, Tmem88, Jmjd3, Dnahc2
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1
Downstream geneEfnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432P04.T7 (MSMg01no432_p04.b1)MSMg01-432P04.TJ (MSMg01no432_p04.g1)
ACCAG524845AG524846
length796772
length of high quality
(start - end)		271 (40 - 310)472 (69 - 540)
definitionCHROMAT_FILE: MSMg01no432_p04.b1 PHD_FILE: MSMg01no432_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:53 2005CHROMAT_FILE: MSMg01no432_p04.g1 PHD_FILE: MSMg01no432_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(69,357,207 - 69,357,474)(69,209,034 - 69,209,505)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CCAGCCAGTTCTTTCTCTAGCCTCTTCCTTATTTCAAGTGTTTCTGGTTG
TTCCCACCCCACTGTAGAGGGTTTGATCTCTTCCTTTTTCCTATTTTCAC
CCTGGGTGGCAAAACAAATAGTGTTTTTCTTCCATTAAGCCCATCACCAT
GGAGACCCAGCCTGCTTCGCCACCCTTTGATTCCTAAGCCCGGCTGATGC
GTTCCACCATCTGTTGAAAGCTCCTGTGTTTTCTTCCTCAGCTTGGCAGA
GACTTGGTAGATTGTGGAGGTTCAGGTTCAGGGTGACAGGAAAAGAAGCC
TACATGTAGGGAACAAAGAGCTGCCTCTTGGGGAGTTGATCCTGGAGCCA
GAGTGGTGGCAGCGCCTTGGCTTGCTTTGACGGTGGCGAGGGGGGTCTGC
CCTGTGCTTCTTGCCTCCCGTTGTGTTTTTATTTTATCTGCTTTTTTGTT
CTCACTCTATATCGTTCTGCTTTCCTCTTCTGTCTCTTCGCGTTTCTTTC
TTCTCTTCGTTCTTATAGTGACTTTTCGCTTTCTTCGTGCAGCTCGTTAC
CCATTGAACTTTATATTATATTCTAACTAAACATCTCTCTCATCCCTATT
ATCTTTCCATTTTTTTTGCTCTCTATATTTTTCTTTTCCTTGCTATATTG
TATATTAGTCTATTCATTCCCGACTACTTACTATCACTTATTTATCGCTT
TTGATATAACCCTCCTTATTATTTTAAATCTATCTCTGACTATATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCTTAGAGGAAATGAAGACAGTCCGTTTCA
TAACGGAGTGTAGGCTAGATGAGTTAGGGGTAACAGAAAGTATCGACGAG
GAGACTAGAATAGAGGGTTTTTTAATCACCAGATTTCAGGCGTTTAAAAG
CTGTTTAAGCAATTGCAGGTAAAGTTCTCGCGATATTCTTCTCGTAGCCC
AGTAGGCATGTAGGGACCTGGCATGAAATAAAATCTCGCGAGATCTGCAG
TGGCGGAACCGGAGGCGAGGAGGAATTGTGATCTCACGAAAGCGCTTGGG
AGCACTCGCGAGATCTGACGCGCCGATCCCCCAAAACGCTCTTAGGAAGT
TTAAGGCCCAAAAGAGGTCCCAGGGCCAATGGCCGGAGCTGGGCCGACCA
TGCTACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCC
AGCGCCGGGGTTAGCGTGGGCTTGGTTTCTGGACGAGCAGTCTGGGAGCG
ACACCGGGCGGTGAGGGTAAAGGCTTTGTCTACTCTCATCTTTTTTTTCT
CCCTCATGTTTTTGTTTCGCTTATTTCACCTTTTTTGCTTTTTTTTGTTT
TTCTCTTTCTCCCCCTTCTCTCTTTTCTTTGTCCCCACACTTCTCTCATG
CTTCTTATTATCTTGTATCATATTGCTCTTTCCCTCTGTTCTCTTCTATT
CCGTTTTTGCTTCTTCGCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_p04.b1 MSMg01no432_p04.b1 CHROMAT_FILE:
MSMg01no432_p04.b1 PHD_FILE: MSMg01no432_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:53 2005
         (271 letters)



>mm_chr11_69357004_69357674
          Length = 671

 Score =  518 bits (268), Expect = e-151
 Identities = 268/268 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccagccagttctttctctagcctcttccttatttcaagtgtttctggttgtt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggaattcaccagccagttctttctctagcctcttccttatttcaagtgtttctggttgtt 412

                                                                       
Query: 64  cccaccccactgtagagggtttgatctcttcctttttcctattttcaccctgggtggcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cccaccccactgtagagggtttgatctcttcctttttcctattttcaccctgggtggcaa 352

                                                                       
Query: 124 aacaaatagtgtttttcttccattaagcccatcaccatggagacccagcctgcttcgcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacaaatagtgtttttcttccattaagcccatcaccatggagacccagcctgcttcgcca 292

                                                                       
Query: 184 ccctttgattcctaagcccggctgatgcgttccaccatctgttgaaagctcctgtgtttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ccctttgattcctaagcccggctgatgcgttccaccatctgttgaaagctcctgtgtttt 232

                                       
Query: 244 cttcctcagcttggcagagacttggtag 271
           ||||||||||||||||||||||||||||
Sbjct: 231 cttcctcagcttggcagagacttggtag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no432_p04.g1 MSMg01no432_p04.g1 CHROMAT_FILE:
MSMg01no432_p04.g1 PHD_FILE: MSMg01no432_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:53 2005
         (472 letters)



>mm_chr11_69208834_69209705
          Length = 872

 Score =  913 bits (472), Expect = 0.0
 Identities = 472/472 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttagaggaaatgaagacagtccgtttcataacggagtgtaggctagatgagttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttagaggaaatgaagacagtccgtttcataacggagtgtaggctagatgagttagg 260

                                                                       
Query: 61  ggtaacagaaagtatcgacgaggagactagaatagagggttttttaatcaccagatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaacagaaagtatcgacgaggagactagaatagagggttttttaatcaccagatttca 320

                                                                       
Query: 121 ggcgtttaaaagctgtttaagcaattgcaggtaaagttctcgcgatattcttctcgtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgtttaaaagctgtttaagcaattgcaggtaaagttctcgcgatattcttctcgtagc 380

                                                                       
Query: 181 ccagtaggcatgtagggacctggcatgaaataaaatctcgcgagatctgcagtggcggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtaggcatgtagggacctggcatgaaataaaatctcgcgagatctgcagtggcggaa 440

                                                                       
Query: 241 ccggaggcgaggaggaattgtgatctcacgaaagcgcttgggagcactcgcgagatctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggaggcgaggaggaattgtgatctcacgaaagcgcttgggagcactcgcgagatctga 500

                                                                       
Query: 301 cgcgccgatcccccaaaacgctcttaggaagtttaaggcccaaaagaggtcccagggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgcgccgatcccccaaaacgctcttaggaagtttaaggcccaaaagaggtcccagggcca 560

                                                                       
Query: 361 atggccggagctgggccgaccatgctactacgagaggagaatggctgttgcagtcggcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggccggagctgggccgaccatgctactacgagaggagaatggctgttgcagtcggcgt 620

                                                               
Query: 421 cagagcagctccagcgccggggttagcgtgggcttggtttctggacgagcag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagcagctccagcgccggggttagcgtgggcttggtttctggacgagcag 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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