BAC Information

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BAC

Clone NameMSMg01-433A19
Chromosome11 (Build37)
Map Location 58,126,303 - 58,126,680
singlet/doubletsinglet
Overlap geneZfp692
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik
Downstream geneZfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433A19.T7 (MSMg01no433_a19.b1)MSMg01-433A19.TJ (MSMg01no433_a19.g1)
ACCAG524922AG524923
length681785
length of high quality
(start - end)		---379 (65 - 443)
definitionCHROMAT_FILE: MSMg01no433_a19.b1 PHD_FILE: MSMg01no433_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:01 2005CHROMAT_FILE: MSMg01no433_a19.g1 PHD_FILE: MSMg01no433_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCCTTTATATATTATTAGAATAGAGGATATGATTTTCCTAATAAACCC
TATAGCAGCCCCCCCTCATCNCCCCCNTTTCTCTAATAATTTTGGCGGGC
CGGCTTAATACGGAACTTNCACTTAATTATTTCCCCCAGAAAGGGAATGC
CCGGGNCGGGGGNNAAAAATTTTTTCCCCCAAATTTTTTTTGGGGGGGGC
CCGCGGCGGGGTTTTTTTTTTTTATATATGTCNCCNNACCCCCCCCAGGA
GGGGGGNGTTTTTTTTTTTNTTTCCTTTTTTTTTTATTTTTTTTCTTCTG
CCCACCCTCCCCCCCAAAAAAAAATTATGTATTCCCCTCTTTTTTTCCCC
CCCCTTNTTTTNTTNCTCTANACAACCATATCCCCTGTTCACCCGATAAA
GNAAAAAATATANNNNNNNCTCCTCCCAATTTGTTGGGGTTTCCAAAGGC
CCCCGGGGGGGAAAAAAAAACACCCCCCCAGAGGAGAGGGGGGGGGGCAC
CAAACGGGGGGGGGGGGGGGGGGGTCCTTTTCTCCCCCATTGTTGGGGGA
AAAAAACACCCCCNACAGAAAAAAAAGGGGGGGCACAAAAGGGGGGGGGG
CGCCCCCCCCCCCAAAAAAAGAAGGGGGGCCTCTCTTTTAAAAAAAAAAA
TTTTTTTTTAAAAACCCCCCCCCCCTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTGAGATATGGTGGAGACATCCACATATTCATGTA
TATGGGCAGGGGTACTAGTTGAGTACTGATGGAGTTGTGGGGGGAAGCTG
TACTGGAAATGTTGGAGACAGCAGATACTCTTCAGGATTCTGGACAGTGG
GCATTACAGAGCCTGTCTGTGAAAGGGAAGACCATGAGGGAAGGTTGAAC
ACTCATGCCTATCTTCAAGTAGGCCAGGGGATAGGTTTGGCCCGAGTTTG
GGCTTTTCCCAAGCTAGTACTGCTAAGGGGCCTGACAGATTGGTAACCTG
AACAAAGTCCATGTGAAAATGGAGCTGAAGGGAAAGGGGGCTATGAGACG
ATTGTAGGGATGGTGGATGGTGGCCTGGAATCAGATTGTCACCCCAGAAC
AAGGCAGGAGGCCCTGGTTGGAGCCTGGTAGTACAGTACTTATCACGGGT
GCCCCTACCGAGCTGTTTTACACAGTGTGTGTCAATCTGGTTCCTTCTGC
TTTCCCTTGTCCCCTTTTTTTTTTGTCTCTTCTTCCCTCTCTCTCCTGCC
TCTTTTTTTTTTTTCTATTCTTTCCTCCTTCTCTTTCCCTTCTTCTTTTC
TTCCTCCTTCTTCCTTTTTCCCCTTCTTCTCTCACTCTTCTTCCTCTATT
CACCGTTTCTTTTTCTATTAGCCCCCTTTTTTCTCCTTCCCTTTCCCTCC
TCTTTTCGCTTCCTTATTTCCCCTCTCTCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_a19.g1 MSMg01no433_a19.g1 CHROMAT_FILE:
MSMg01no433_a19.g1 PHD_FILE: MSMg01no433_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:01 2005
         (379 letters)



>mm_chr11_58126103_58126881
          Length = 779

 Score =  731 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagatatggtggagacatccacatattcatgtatatgggcaggggtactagttgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagatatggtggagacatccacatattcatgtatatgggcaggggtactagttgagt 260

                                                                       
Query: 61  actgatggagttgtggggggaagctgtactggaaatgttggagacagcagatactcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgatggagttgtggggggaagctgtactggaaatgttggagacagcagatactcttca 320

                                                                       
Query: 121 ggattctggacagtgggcattacagagcctgtctgtgaaagggaagaccatgagggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattctggacagtgggcattacagagcctgtctgtgaaagggaagaccatgagggaagg 380

                                                                       
Query: 181 ttgaacactcatgcctatcttcaagtaggccaggggataggtttggcccgagtttgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaacactcatgcctatcttcaagtaggccaggggataggtttggcccgagtttgggct 440

                                                                       
Query: 241 tttcccaagctagtactgctaaggggcctgacagattggtaacctgaacaaagtccatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcccaagctagtactgctaaggggcctgacagattggtaacctgaacaaagtccatgt 500

                                                                       
Query: 301 gaaaatggagctgaagggaaagggggctatgagacgattgtagggatggtggatggtggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaatggagctgaagggaaagggggctatgagacgattgtagggatggtggatggtggc 560

                             
Query: 361 ctggaatcagattgtcac 378
           ||||||||||||||||||
Sbjct: 561 ctggaatcagattgtcac 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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