BAC Information

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BAC

Clone NameMSMg01-436K02
Chromosome11 (Build37)
Map Location 120,399,231 - 120,399,597
singlet/doubletsinglet
Overlap geneGcgr
Upstream geneNptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716
Downstream geneBC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436K02.T7 (MSMg01no436_k02.b1)MSMg01-436K02.TJ (MSMg01no436_k02.g1)
ACCAG527651AG527652
length794741
length of high quality
(start - end)
49 (153 - 201)367 (80 - 446)
definitionCHROMAT_FILE: MSMg01no436_k02.b1 PHD_FILE: MSMg01no436_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:45 2005CHROMAT_FILE: MSMg01no436_k02.g1 PHD_FILE: MSMg01no436_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCAGATCTTTGCCCCTATTAATAAGCCAGGTGGCACAAGCCTGC
AATCCTAGCACTGATGAGACGGAGGCAAGAGCACTGCTGGGGATCAGGGC
TGGCTACTCTGACTACACTGTCGAGCTCTACATCAGTGAGAGACCCTGTC
TCATAGAATGACAAGAATCAAGAATGACAAGGAAACAGACATAATGTTGA
CCTCAAGCCCTCAACCATGGGGGGTATATGGCTGTACATATACCCTTCCA
CACACATACATTACACAAACTTTCTTATTCTAACATCCATTCAAGTTCCC
CACCTGTTGTAGAGACTGCATCTTATTACATGGCTCTAGCTGGTCTTAGA
ACTCTGTGCATATCCCTTCTCCCTTTTATCGATTGATAATTTTGCTAACA
ATATCTTATGTATCATGTTGATTTCTGTTTTATCTGAATAATCCCATGTA
CTACTCCTCCAATTTGATTTTGCAAGATTGCACTTCTGTTCGTTTCTACT
ACTACTATTTACTCGACCTTTTTTTCCATTTCTCCACCTAATTGATATAC
CTTCTCTGTATTTGTCCCTTTCACACTACTACAAGTACATTTCCCTCCCC
TTTTTCACGCCCGCTTTCCCCCCTTTTTGTCTTCACTTTTTTTCCCTTTT
TCTTATTGTACATCTCTTTTCGTATCACCCTTTGTTACTGCACTTTCTCC
TTCCTTCTCTCCCTTTATCTCATCCCCTTCTCTTCTTTTTCTCN
ATGTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAGGACCTAGGGGGACCT
GATATCCAACACATGCAACCTTAATAATGGGGATGGAGATATGGTCATAC
CAGGGCAAGGCCACCCTCAGGGCCAGCTCTGATTGTGTTCCCAGCTTCAC
CTACCTCCTTGTTGAGGAAACAGTAGAGAACAGCCACCAGCAGACCCTGG
AGAAAGAGAGTGGTCAAGGACAGCACTCTGGGTCCCAGGGGTGGGGTATG
ATGGAGACTCACCTGGAAGGAGCTGAGGAACAGGTCAAAAAAGAGCTTGG
TGGAGCGCAGGGTGCCTTGGGCATGCTCATCAGTCACAAAGGCAAAGACC
ACCTCGTGGACCCCCAGCAGAGGGATGAGGGTCAGCGTGGACCTGGCCAG
CCTGCAGGGGCAGAGCTTGAGGACCCTTACCTTCCGGGTCTTCTGGGCTT
TCCCCCACATAGGCACTGACCCCAATCCCTGCCCCTCTCCAGTCTGGGTC
CAGGCCCTCGCCCTTACCCACCGGAACTTATAGCCAGCATAGTGCTTCTG
ATGTCTTCTCAGCTTGGTCTCATGTATGTGAACGATGTGGACTAAGATGA
ATAATTTGACTTGTGTTGATAAGGTACTGTCTACGTTCCACTTCGATATT
CTTTTTGGTCCTTACCTGGTCTCTTTTAATCTCTTCGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_k02.g1 MSMg01no436_k02.g1 CHROMAT_FILE:
MSMg01no436_k02.g1 PHD_FILE: MSMg01no436_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:45 2005
         (367 letters)



>mm_chr11_120399031_120399797
          Length = 767

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgaggacctagggggacctgatatccaacacatgcaaccttaataatggggatggaga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 567 cctgaggacctagggggacctgacatccaacacatgcaaccttaataatggggatggaga 508

                                                                       
Query: 61  tatggtcataccagggcaaggccaccctcagggccagctctgattgtgttcccagcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tatggtcataccagggcaaggccaccctcagggccagctctgattgtgttcccagcttca 448

                                                                       
Query: 121 cctacctccttgttgaggaaacagtagagaacagccaccagcagaccctggagaaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cctacctccttgttgaggaaacagtagagaacagccaccagcagaccctggagaaagaga 388

                                                                       
Query: 181 gtggtcaaggacagcactctgggtcccaggggtggggtatgatggagactcacctggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtggtcaaggacagcactctgggtcccaggggtggggtatgatggagactcacctggaag 328

                                                                       
Query: 241 gagctgaggaacaggtcaaaaaagagcttggtggagcgcagggtgccttgggcatgctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 327 gagctgaggaacaggtcaaaaaagagcttggtggagcgcagggtgccttgggcatgctcg 268

                                                                       
Query: 301 tcagtcacaaaggcaaagaccacctcgtggacccccagcagagggatgagggtcagcgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcagtcacaaaggcaaagaccacctcgtggacccccagcagagggatgagggtcagcgtg 208

                  
Query: 361 gacctgg 367
           |||||||
Sbjct: 207 gacctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)