XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATAGATATTCACTCTCTTTAACCACTGCACTAGAAAGCTTCTCCCGG
AGGACTTTGTTGCAACACTTCTCAGTGGATATAGTGATACATATTTAGAG
GACAATTTGACCTAATAATGTTCAGTGAACTCCAAAGCCATAGGTTCTGG
GTGACTATGGATATGTTCTAGGACATATTGGGTATGTATTTCCTCCCATG
GAGTGGATCTTTAATCCAATTGGAAAATGGTTGGTTATCTCAACATTTGT
GCCACTGAAATAGCAATGGACATATATTGTCAGGGCAGTTGTGACTGCAA
ATATCAGGTTTATGACTTAATAAAATCATTGGTGGCTTTTCTTCTGGCGG
TATGGAAGGATAGCCAGAAAAGAAGCAGCTTCTGGGTCAGTACAAGCTTG
ATTTGTCCATGTTTTATTAGCAATATATGTGTGGTTTTCAGCAATATGGA
CAAAGCATCAAAATCTGGTGGGCAATGGAAACTAACAGAGATACCTGTGA
ACAGTATCTTGAGGGTGGGTATCTCACACACCTGAGCTTTTAGTTTGACA
AGCTATAACTTCTAGGATAATCATTACCTCATGTAGGATAATTTTGACCA
AGCTCTTTTGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TTTCTTATCTCCTCTCCCTCCCTCACTTCCCTTTTATCTCTTCTACTTCC
TATCTCACTCTCTTTTG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTACTCATCTAGATTTTCTGTAAGTTAATT
TTTATCTTTCACTTCATTAATATATATTTATTTAAAATATTTGTTTCCTG
ATAGTTATTTCGCTTTTCAGATTTTCCAAAAAAATGAAAATATCCAAATT
TCATTTTTATTAGTAGGAGTACCTATATCCATTCTACTTGTGTTGAAAAC
AGAATATTCGAATATTAATTCTAAAAAAATGGTAACATTAGTTAAACACA
TTCTTCATGAGCCAGCCACTACATGTTTGTGTTAACTTAATTGACCAGCC
ATCATTTGAGGTACTTTGCATATTATTTTCTATTTTCCAGAAAAGAAAAC
TAAATGTGTTCTCTGAGAGATACTTTGTGAGGCAGTACTGGTTCTAATGC
CAAGATATTTGGCTATAACTTATTATTGATTATTATATATTGCATCTAGA
CCTTGGAAATAGCTCAATACTAAAGACTGTCTAGTAAGTTCTTTCCTCAG
GATGAGAGAGTCAATTTACTATATATTATTTTTTTTAAAGTTCTTTTTGC
CTTTCTATCATCTAAAATCAACTTAAAGTAGATTTGTATTATTTCCAGTG
AGAAATACAGTTTATCTACAAGACAATCAATAACTTTTTCCCTTGGTTCT
GGTTGACTCTTAACATATAACTTATCTGTAAGCAGTGATGGCTTTTTAAG
CTATTTGTAAACTCTCAAACA

Query= MSMg01no437_c20.g1 MSMg01no437_c20.g1 CHROMAT_FILE:
MSMg01no437_c20.g1 PHD_FILE: MSMg01no437_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:28 2005
         (578 letters)



>mm_chr11_42188808_42189786
          Length = 979

 Score = 1052 bits (544), Expect = 0.0
 Identities = 569/578 (98%), Gaps = 3/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttactcatctagattttctgtaagttaatttttatctttcacttcattaatatatatt 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 203 acttactcatctagattttctgtaagttaatttt--tctttcacttcattaatatatatt 260

                                                                       
Query: 61  tatttaaaatatttgtttcctgatagttatttcgcttttcagattttccaaaaaaatgaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tatttaaaatatttgtttcctgatagttatttcacttttcagattttccaaaaaaatgaa 320

                                                                       
Query: 121 aatatccaaatttcatttttattagtaggagtacctatatccattctacttgtgttgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatccaaatttcatttttattagtaggagtacctatatccattctacttgtgttgaaa 380

                                                                       
Query: 181 acagaatattcgaatattaattctaaaaaaatggtaacattagttaaacacattcttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaatattcgaatattaattctaaaaaaatggtaacattagttaaacacattcttcat 440

                                                                       
Query: 241 gagccagccactacatgtttgtgttaacttaattgaccagccatcatttgaggtactttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagccagccactacatgtttgtgttaacttaattgaccagccatcatttgaggtactttg 500

                                                                       
Query: 301 catattattttctattttccagaaaagaaaactaaatgtgttctctgagagatactttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 catattattttctattttccagaaaagaaaactaaatgtgttctctgagagatactttgg 560

                                                                       
Query: 361 gaggcagtactggttctaatgccaagatatttggctataacttattattgattattatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggcagtactggttctaatgccaagatatttggctataacttattattgattattatat 620

                                                                       
Query: 421 attgcatctagaccttggaaatagctcaatactaaagactgtctagtaagttctttcctc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 attgcatctagaccttgtaaatagctcaatactaaagactgtctagtaagttccttcctc 680

                                                                       
Query: 481 aggatgagagagtcaatttactatatattattttttttaaa-gttctttttgcctttcta 539
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 681 aggatgagagagtcaatttactatatattatcttttttaaaagttctttttgcctttcta 740

                                                 
Query: 540 tcatctaaaatcaacttaaagtagatttgtattatttc 577
           | ||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatctaaaatcaacttaaagtagatttgtattatttc 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)