BAC Information

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BAC

Clone NameMSMg01-437E05
Chromosome11 (Build37)
Map Location 91,379,484 - 91,379,634
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
Downstream geneKif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437E05.T7 (MSMg01no437_e05.b1)MSMg01-437E05.TJ (MSMg01no437_e05.g1)
ACCAG528137AG528138
length872889
length of high quality
(start - end)
---154 (77 - 230)
definitionCHROMAT_FILE: MSMg01no437_e05.b1 PHD_FILE: MSMg01no437_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:35 2005CHROMAT_FILE: MSMg01no437_e05.g1 PHD_FILE: MSMg01no437_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCCCCTCCTTTCCATCCCCTTCCCTACAATTCCCTCCCCAAATGAGCGT
CCCCTCACCTATTTCCCTCGGGCGCCCCTTACTTTTAACATTTTTAACCC
GCACCACCCCAAAGCATTTTATTTGTTTAGTATGAGGGGCGAGGGGGGGC
CAAAGAGAGAAATAATTTTTATGTCTAAATTTGTTTTGCCAAAAAAACAT
ACGCAGTCTCACTAACCCCGCCCAAATTAGTAAATGACGTTTTTTATTTA
TGTCTCATTTCCCCTTCCCGATTATTATTATACCACTCAGCCCCTCGTCC
CTTTGCACTCCCACTACCCTAACCCCCGCTTTGCGCATACCATTTTTGTT
CCCCCACCCTGTGTTGTTCCCTACGATTTCACCTCTTTCCCCCCCGTTCC
CCCCCCCAAATGCTCGTAGCTCCCCCCCACCCTGTTTATTTTTCCCCTCA
AGCCCATTCTCCCCTTTATACCCCCGTCCACCCGCACCATTTTACGCACC
CTCTATCCTCTTTTTCTTCGCCCTCTACTCCCGCAGTGACCCTACATCTC
CCCCTTTTATTTCACCCCCCCTTCGTTTGACTCTATTCGCTAGCGCCATC
ATTTCACCCGTTTACCCGTTTTTCGCCCCCTCCGTCCTACCTGCAGGTTT
TTTTTACCCCCGCACCGCGCCCCACTCACCATTTGTAAATAAACGCTATT
CCCGCAGCTACGTGCTCGCCAGTCGATGACAATCCAGGCGACCGCCCTCT
CTAACTCTCTATTTACGTCCCCCTCCCCATATAAAAACTTCGCAACACAC
ATCGTTCATAGCCGAGCTCATATTGCACACAACACAGGAGTACAATTGAT
TACTCCGAGCGCCTGATAATAT
NCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCAGAAATTCCTATACAACACACTTAGTGTAAAT
CAGTTCAATTTTTACAATATTTCAAAATTTATTTTTAAACAGATATATTA
GATATAGAGATAGAGATAATATAGAAATAAAGATAGATAGATAGGTAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGCTCCTTCTCCCTTCTT
TTCTTCTTTTTTTCTCCTTCCTCTCCCTTCTCCCTTCTTTTTTTCTTTTC
CCCCTTTCTCTCCTCCCCCCTCCCTTTTTTTTTTTCACCACCCCCTCTCT
AACTTCCCCCCTCCTTTTTTTTTTCTTCCCCCCCCCCCTTCTTTCTCCTT
TTCTTCTTTATCTCCTTTTTTACCATCTAGTTGCCCCCCCCCTCTCTTTC
ATTTCCTTCACTTTTTCCCCCCGTTTCCCCTCCCCTCCTCTCTCCTCTTT
TATCTCTCTCGTCTCCCTTTTCTGCCTCTTTTTCCTCCCCCCGTCCCTTC
TCTTTTCTTTCTNCTCCCATTCCACTTTCCTTCTCTTCTTCTTTCCCCTC
TTTTTTCCGCCTTCGTCTCTCTTTGCGTCCCTTCTCGCCCCCTCTTCTCT
CTCTCCTTTCTTCCCTTTCTTCTTTTCCTCTTCCTCCTCTCCTTCTCTCC
TTTCTTCCTCTTCTTCCTTACGCCCACCCATATTCTTGTCCTTCTTTCTT
ATTCCTCTTTTACTCTCTACCCCTTCTGTCTTTCTTTTTTACCTTCCCCT
TCCCCTTCCCTTACGCTTTTCCATAATTTCTTTCTTGCTTCCCTTTTTCT
CCTCTGTTCCCTTTACTTTTTCTCTTCTCCGCTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_e05.g1 MSMg01no437_e05.g1 CHROMAT_FILE:
MSMg01no437_e05.g1 PHD_FILE: MSMg01no437_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:35 2005
         (154 letters)



>mm_chr11_91379331_91379884
          Length = 554

 Score =  261 bits (135), Expect = 1e-74
 Identities = 147/151 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   atacaacacacttagtgtaaatcagttcaatttttacaatatttcaaaatttatttttaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atacaacacacttagtgtaaatcagttcaatttttacaatatttcaaaatttatttttaa 245

                                                                       
Query: 63  acagatatattagatatagagatagagataatatagaaataaagatagatagataggtag 122
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 acagatatattagatacagagatagagataatatagaaataaagatagatagatagatag 185

                                          
Query: 123 atagatagatagatagatagatagatagata 153
           ||||||||||||||| ||||||| |||||||
Sbjct: 184 atagatagatagatacatagatacatagata 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)