BAC Information

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BAC

Clone NameMSMg01-437H20
Chromosome11 (Build37)
Map Location 85,350,443 - 85,350,653
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437H20.T7 (MSMg01no437_h20.b1)MSMg01-437H20.TJ (MSMg01no437_h20.g1)
ACCAG528310AG528311
length768776
length of high quality
(start - end)
214 (43 - 256)280 (103 - 382)
definitionCHROMAT_FILE: MSMg01no437_h20.b1 PHD_FILE: MSMg01no437_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:54 2005CHROMAT_FILE: MSMg01no437_h20.g1 PHD_FILE: MSMg01no437_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTGAAAGACACCCAACAACTGTAAACTGTACCTGTACCCTGTGCTC
AATTCCCTGCCCCACAAGTCTGCCTCCTTTCTAGATAAGACAACCTCCCC
TCCAAATCTTGCCCACCAACTCCCCTGAAAGCACCCCTACCAGTGTGGGA
CGCTGCACCCCATACCCAGACAGGAAATGGAAACAACCGACACGTCCTTT
AACCAAAGAGAAGACCAATAAGGACAGATTATAATTTATAAAATGAAATA
TCACCTAGCTATTAAAAATAGTGCCATCATGAAACTTGCAAGCTCATAGA
TGGAACTAGAAAAGACCATCCTGAGTAAGATAACCTAGACCCGGAAAAAC
AAACATGGTGTATACCAAGTGGCTATTAGCCATAACGTACCAGATAACCA
TACTATAATCCATACACCCAAAGAAGATCAGTAACTAGGAGGAAGATACT
TGGATCTTACTGAGAATGACGAATAGAATATACATCATAAGTGCATGGAG
TAAGGAGACTAGGGAGGGGAAGAGATGGGGATCAACGCTATGGAGTCTCT
CGGCCAGCAAAATGGAACCTTTCCCGGCTTTCTTCCATATCACGTGGGCT
TCATGTCCCCTCTGCCCAGTAAAGAACTATAGTGACCCACCTGTCTCCCA
CAAGTGTGCCTGACAAACTCGAAAGGCCCACCCACCTCCTTGTAATTCCC
TATTCACTTTTACTTTTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTAGCCTCGAACTC
ACAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGAGTGTGC
CACCACGCCTGGCTCCCGAAACTATATTTTATGCCTGCATATTTTTGTAG
AAATGTCCCTTCTCATCTTTGAAATAGGATTTTATTGTGACTCTTAGGTT
GTCTTTGAACTCACAGCAGTCCTGCTCAGCCACCTCAGTGCTTTGGTCAC
TGCTCTGCAAACACATTGACCTGCTTTGCTTGGGTAAATTCTGTATGTGG
AGTTGCTGCCTCAATGCTGCGTGCATTTGTGGCTCATACCTTATTTGCTT
TTTTGGTTTTCACTTTTGTGCAGGAAGCCTGCTGTGTGTGGCTCTGTGGT
CTTGGACCCCAGAACAAGGTGTTGCAGACGTTGGAGCTGCAGCTCCTGCT
TGTTTTCACGTCCCCCAATTCCCCCTTTAACTACTCCTTGGTCCTTGACG
CTTCTTCCTGCTCCTTTTTTCTCTTTCCTCCCCCTTTTCTTCCCTTCTTT
TCTCACTTCTTCATTCCTTTTTACTCCTTTTCCTCCCCTCTTTCCTCTCC
CATTCTCCTTCTATTTTTCTTCCTCCCAGCTCTCTTCCCGCATTTTCCCC
TCTTTTTCTCTTCTTTTATCCCTTATCTCTTCTTTTTTCTCCTCCTTTTT
TCTTCTCCTTTCCTTTTTTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_h20.b1 MSMg01no437_h20.b1 CHROMAT_FILE:
MSMg01no437_h20.b1 PHD_FILE: MSMg01no437_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:54 2005
         (214 letters)



>mm_chr11_85350239_85350853
          Length = 615

 Score =  346 bits (179), Expect = e-100
 Identities = 203/211 (96%), Gaps = 1/211 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgaaag-acacccaacaactgtaaactgtacctgtaccctgtgctcaattc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaattcctctgaaagcacacccaacaactgtaaactgtacctgtaccctgtgctcaattc 356

                                                                       
Query: 64  cctgccccacaagtctgcctcctttctagataagacaacctcccctccaaatcttgccca 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 355 cctgccccacaagtctgcctcctttctagataagacaacctcccgtccaaatcttgccca 296

                                                                       
Query: 124 ccaactcccctgaaagcacccctaccagtgtgggacgctgcaccccatacccagacagga 183
           ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||
Sbjct: 295 ccaactcccctgaaagcacccctaccagtgtggtacgccgcagcccatacccagccagga 236

                                          
Query: 184 aatggaaacaaccgacacgtcctttaaccaa 214
           ||||||||||||| | |||||||||||||||
Sbjct: 235 aatggaaacaacctagacgtcctttaaccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 615
Length adjustment: 9
Effective length of query: 205
Effective length of database: 606
Effective search space:   124230
Effective search space used:   124230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)