Query= MSMg01no437_m14.b1 MSMg01no437_m14.b1 CHROMAT_FILE:
MSMg01no437_m14.b1 PHD_FILE: MSMg01no437_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:17 2005
(515 letters)
>mm_chr11_92161524_92162438
Length = 915
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Plus
Query: 5 gaattcttttaattctttaatcctagttgatcagtgtatttacgttttttgttcatttta 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaattcattaatcctagttgatcagtgtatttacgttttttgttcatttta 264
Query: 65 cagaggagattagactaccattgtaactcaattagtagattgttagcgtgcatgaaatcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaggagattagactaccattgtaactcaattagtagattgttagcgtgcatgaaatcc 324
Query: 125 tgattttaatcccagcactgcataaattggttgtcttggtgaatccttgtaatcttagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattttaatcccagcactgcataaattggttgtcttggtgaatccttgtaatcttagca 384
Query: 185 cagagaagaggagataggagcatgggacttttaagaccacactcagctccataccacagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagagaagaggagataggagcatgggacttttaagaccacactcagctccataccacagc 444
Query: 245 aacaaaatgagagggaagagagagagaagaggaaactgagacacaaatacactaacacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaaaatgagagggaagagagagagaagaggaaactgagacacaaatacactaacacat 504
Query: 305 cttccgtgctcaacagagcagggttctgtatccatctagcctattaaacccacccacaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttccgtgctcaacagagcagggttctgtatccatctagcctattaaacccacccacaat 564
Query: 365 gagacctggcaagctctctctctcaaagggctatatcataaatgtacccaattttgtcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagacctggcaagctctctctctcaaagggctatatcataaatgtacccaattttgtcag 624
Query: 425 ccatatggtctctgcagcaactacttggctcagttttatagcacaaaagcaaccactgac 484
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 ccatatggtctctgcagcaactacttggctcggttttatagcacaaaagcaaccactgac 684
Query: 485 aaaatgtaattgaatgggtcataataaaact 515
|||||||||||||||||||||||||||||||
Sbjct: 685 aaaatgtaattgaatgggtcataataaaact 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_m14.g1 MSMg01no437_m14.g1 CHROMAT_FILE:
MSMg01no437_m14.g1 PHD_FILE: MSMg01no437_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:18 2005
(405 letters)
>mm_chr11_92348979_92349783
Length = 805
Score = 729 bits (377), Expect = 0.0
Identities = 398/405 (98%), Gaps = 1/405 (0%)
Strand = Plus / Minus
Query: 1 aagacacagaaagacaaatgttgtatggtgattctcatctgtgattctgaactccaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aagacacagaaagacaaatgttgtatggtgattctcatctgtgattctgaactccaaatc 632
Query: 61 tcaagatggaatattacaacctggagtaactacagaaactaggaatgttaaaagagccta 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcaagatggaatattgcaacctggagtaactacagaaactaggaatgttaaaagagccta 572
Query: 121 aacagttggaagcagtaaagagagggatagcagaaatcaattgacctgaagaagggatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aacagttggaagcagtaaagagagggatagcagaaatcaattgacctgaagaagggatat 512
Query: 181 atttatttaagagggtggaagtatgattaatacagaatacacgagggaaaaataacacta 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 511 atttatttaagagggtggaagtatgattaatacagaatacacaagggaaaaataacacta 452
Query: 241 aggatgattatatttttctcaaggaatcatattattaccaatttacctgaaattacatgt 300
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aggatgattacatatttctcaaggaatcatattattaccaatttacctgaaattacatgt 392
Query: 301 attgtgcttaagactatgtatacacatatataatttaaatgtaaacttcccatctgggct 360
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 391 attgtgcttaagactatgtatacacatatataatttaaatgtaaatttctcatctgg-ct 333
Query: 361 gacactgctttccagcaagagccaacatcaaaatacccaacatca 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gacactgctttccagcaagagccaacatcaaaatacccaacatca 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
