BAC Information

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BAC

Clone NameMSMg01-438O17
Chromosome11 (Build37)
Map Location 16,136,573 - 16,136,917
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438O17.T7 (MSMg01no438_o17.b1)MSMg01-438O17.TJ (MSMg01no438_o17.g1)
ACCAG529399AG529400
length776781
length of high quality
(start - end)
475 (66 - 540)341 (72 - 412)
definitionCHROMAT_FILE: MSMg01no438_o17.b1 PHD_FILE: MSMg01no438_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:52 2005CHROMAT_FILE: MSMg01no438_o17.g1 PHD_FILE: MSMg01no438_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAAT
TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACATTGTACT
TGAGGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGCCTGAT
AAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCACACAAGTCAA
TGGCCTTTCTGTATACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGAC
TCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTAAGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGAAAAGATCTCCCATGCTCA
TGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAAT
CTACAGACTCAATGCAATCCCCATTCAAATTTCACTCTCATTCTTCAACG
AATTAAAAAGGGGAACCCGCCGGATCATCTTGGAATAACAAAAACGGAGG
GAAGGCAAAACTCTTCCTCAGGGAAA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTGCACTTGGGGGCTGGGGATGATGAG
ACGGCTGGTGCTGGATCACTAAGGCAGGATAGTGGAAGCCCCTGATTCTG
GAATATGGGTGGTTCTCAGGTTGCAAACAGGAGGATTCAAAATTTTCCTT
ACTGAAAAGAAAAAAAAATATTTGACAATAGCTCAGATGAATTAGGAAGT
TTAAAAAATGAGTACTGATTTGCTAAGGTTGCCAGAAAAGGGGAGGGGGG
AACCCAAATATTTAGTTTGTTGTGTCTAGGAGATATTAATGGAATAAATT
TTTTCCTGACAGCTCTAGACTTAAGAATGATGTTTTGTCCTTTCTGCTCA
GTCGTTCTGTAGCACTGCAGGCAACCATGGCACCCAGTCGGAATGGCATG
ATCTTGAAGCCCCACTTCCACAAGGCTTGTCAGCAGCAAAAAGAAAATTG
GTTCAACCATGCCGTAGACAAGATCCCTTAGATGCAATGTCTTGGCATGC
AAAAGTATATCGTATTGTTCCTTATCCCCTATCCGGTCTCATTCAGGTTC
ATTCGGAGTTACCCTTCCCCCTCAAATATCTTCTCCACTATTTTTCCCCT
TTCGTTGCTTTTCTCTTCTGTTCCCCTTTCGCTGTCTCTCCCCCCTCATT
TATTTATATCCTCGTCTTTCTTTTCTCCCTTTTTTTGTCTATCTCTTCCC
CCTGTTTCTCTTAACTTTTCTCCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_o17.g1 MSMg01no438_o17.g1 CHROMAT_FILE:
MSMg01no438_o17.g1 PHD_FILE: MSMg01no438_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:52 2005
         (341 letters)



>mm_chr11_16136373_16137117
          Length = 745

 Score =  584 bits (302), Expect = e-171
 Identities = 333/346 (96%), Gaps = 6/346 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgcacttgggggctggggatgatgagacggctggtgctggatcactaaggcaggata 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgcacttggcggctggggatgatgagacggctggtgctggatcactaaggcaggata 260

                                                                       
Query: 61  gtggaagcccctgattctggaatatgggtggttctcaggttgcaaacaggaggattcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaagcccctgattctggaatatgggtggttctcaggttgcaaacaggaggattcaaa 320

                                                                       
Query: 121 attttccttactgaaaagaaaaaaaaatatttgacaatagctcagatgaattaggaagtt 180
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 321 attttccttactgaaaag-aaaaaaaatatttgacaatagctcagattaattaggaagta 379

                                                                       
Query: 181 taaaaaatgagtactgatttgctaaggttgccagaaaaggggaggggggaacccaaatat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaaaatgagtactgatttgctaaggttgccagaaaaggggaggggggaacccaaatat 439

                                                                       
Query: 241 ttagtttgttgtgtctaggagatattaatggaataaattttttcctgacagctctagact 300
           |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 440 ttagtttggtgtgtctaggagatattaatgtaataaattttttcctgtcagctctagact 499

                                                         
Query: 301 taagaatgatgttttgt-----cctttctgctcagtcgttctgtag 341
           |||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 500 taagaatgatgttttgttttgtcctttctgctcagtcgttctgtag 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 745
Length adjustment: 9
Effective length of query: 332
Effective length of database: 736
Effective search space:   244352
Effective search space used:   244352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)