BAC Information

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BAC

Clone NameMSMg01-439A20
Chromosome11 (Build37)
Map Location 14,726,011 - 14,726,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
Downstream geneLOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A20.T7 (MSMg01no439_a20.b1)MSMg01-439A20.TJ (MSMg01no439_a20.g1)
ACCAG529501AG529502
length770749
length of high quality
(start - end)		487 (42 - 528)426 (72 - 497)
definitionCHROMAT_FILE: MSMg01no439_a20.b1 PHD_FILE: MSMg01no439_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:03 2005CHROMAT_FILE: MSMg01no439_a20.g1 PHD_FILE: MSMg01no439_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGTTTTATCCCAGATATAGATAAGGTGATTCCTTGGGTATCTAATAAG
AGTCTTGCAATAGTGTTGATCATTCTTTACATAGCTGTAATTATGTATTT
GACAGAAACAATGTAACAACCACAACAACAGTGAAAGGAGGAACACAGGA
AGAACATTGGACAAGAAACAGCCTTGATATTTGTAGTAATCTACTTATAC
ATAGTACTGATTTCAAAAATTTCCACAACCTCCACTGCAGTATCACCAGA
TGCAAAACAAGCCTTGACTCTAGAAGACTTTTGGTGGAATTTCACATGTA
AATCATAAGCAATTGCATGCTGCTTGACTGGATCAGATGTCAAAATAATT
ATAATGGTTTATGAAATCAGATGCCAACCTCATTTGTCACCTCTTGGAGT
TTTCCAAATACTTCACATCCCCTTTGCCATAGTTCCTGTCTACTTCCTAG
GGTACATTCAGCGATTACTTTGACTTAAAATTTTCACAATTGTTAGTCTG
CTTCTGCTAATGTCTTTTAGTACAAGTAAATTCCAATTTGCTTACTCACT
ATCTTCGGACATTATATTCCATCTCTCTAATCTGGATACATATCCCAAAC
TCTTCCTTTAAAAACCATTTCTCCTCTACCAATTTTACTTAAAAAAATTT
TTGTTTCCGCGGAGGTTTAAATTTTTTCCAAACGGGGGCACCTTGGTTTT
TTTTTATTCCCCCCCCCCCG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGTGGTAA
TGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAAT
TCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTAAAAC
AGACTGTTGAGAAGGATTCAACTGTGTGAATTCAGAACTCTTCAGCTGGT
GAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTTGAAC
TTTCTAACGAAATTCTTTATTTGTCTATCAGAAGTAAAGTGGGAAATAGC
TTTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTC
TATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAA
CCTTTTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGC
GGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGTTATCTATCAC
AATTATAGCGTTTACAGAGAGTATCAGCATATAGGATATATGGTTCACTA
AATAATTATACATGCCTTTTCTTGTGCTTTTGAACCTTGATGTAAATTTT
ATTGTCTGGTAACAAATACCTGCGCATTACTTTTCCTTCTCTTTGTACCT
ACTTTTTACTTTCTCCTCCCTGTTTCTCCTTTTCATGTTTCTTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a20.b1 MSMg01no439_a20.b1 CHROMAT_FILE:
MSMg01no439_a20.b1 PHD_FILE: MSMg01no439_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:03 2005
         (487 letters)



>mm_chr11_14725688_14726575
          Length = 888

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%), Gaps = 1/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 124 aacaaccacaac-aacagtgaaaggaggaacacaggaagaacattggacaagaaacagcc 182
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 688 aacaacaacaacaaacagtgaaaggaggaacacaggaagaacattggacaagaaagagcc 629

                                                                       
Query: 183 ttgatatttgtagtaatctacttatacatagtactgatttcaaaaatttccacaacctcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttgatatttgtagtaatctacttatacatagtactgatttcaaaaatttccacaacctcc 569

                                                                       
Query: 243 actgcagtatcaccagatgcaaaacaagccttgactctagaagacttttggtggaatttc 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 568 actgcagtatcaccagatgcaaaacaagccttgaatctagaagacttttggtggaatttc 509

                                                                       
Query: 303 acatgtaaatcataagcaattgcatgctgcttgactggatcagatgtcaaaataattata 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acatgtaaatcataagcaattgcatgctgcttgactggatcagatgtcaaaataattata 449

                                                                       
Query: 363 atggtttatgaaatcagatgccaacctcatttgtcacctcttggagttttccaaatactt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atggtttatgaaatcagatgccaacctcatttgtcacctcttggagttttccaaatactt 389

                                                                       
Query: 423 cacatcccctttgccatagttcctgtctacttcctagggtacattcagcgattactttga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cacatcccctttgccatagttcctgtctacttcctagggtacattcagcgattactttga 329

                
Query: 483 cttaa 487
           |||||
Sbjct: 328 cttaa 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 888
Length adjustment: 10
Effective length of query: 477
Effective length of database: 878
Effective search space:   418806
Effective search space used:   418806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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