BAC Information

Click to search

BAC

Clone NameMSMg01-439D22
Chromosome11 (Build37)
Map Location 24,261,488 - 24,261,860
singlet/doubletsinglet
Overlap genenone
Upstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D22.T7 (MSMg01no439_d22.b1)MSMg01-439D22.TJ (MSMg01no439_d22.g1)
ACCAG529645AG529646
length750799
length of high quality
(start - end)		376 (47 - 422)171 (75 - 245)
definitionCHROMAT_FILE: MSMg01no439_d22.b1 PHD_FILE: MSMg01no439_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:19 2005CHROMAT_FILE: MSMg01no439_d22.g1 PHD_FILE: MSMg01no439_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGATCCGC
GGAATTCTCTTTCTTACCAGGGCATTTGGCATTTGAGGAAAAAAAAATCA
CCTTAACTCTTTTGCTGACTCCATTTCTTATCCTGAAACAAAGCAGACAT
GAGATGGCCGTGGGAGTTACAATTTCTTAATAACACCCTCTTAGAGACAT
TCACATCCCAATTCCTGGAACTTGTGGATGTTGTATCATGTGGCAAGTCC
TTCCAGGTGTGATGAAGTGAAGGCTCTTGAGATGAAATGATTCAGGACTA
TGCAGCTATGTTCTAACGGCTAGCATCCTTAGAAAAGTAAAGCAGAGAGA
TACCTAACATAAAGAGAGGAAAGGGCCACATGGCTATGGAGTAGCAACCA
CTGATCACCCAGGTGGTGCACCCAGTACTCAAAGTGGTAGGAAGAGACAA
GAGCTAGATTCTCTGCTGGTCCCTAATGGGTTCTTGAGTTCAGCTGTGTT
ACCAGGTTTGGGCTTCCTGCTTCTAGAACCATGAGAAAATACCTTTCTGT
CTTCTAAGCAATCAGGGTTATGGGAATTTGTCCCAGGGGCCACAACAAGC
GGTTATTAAAAGATCTCCCCGGAATGCTCTTTAAGGGGGACAACCAAAAA
AACCGAAATGGGCTGGCCTCCCTCCTTGGGTAACTGAACCCCCGCCAGGT
TATATAAAAACCCCTGGGGGAAAATTGTGGGGTTTTTCACCCCCCAACCG


CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTCTTGCGGTTGTCTTCTTTTAGG
TTTGTTGAACGATTACTTTCTTGCTTTTTCTAGGGTGTAGTTTCTGTCCT
TGTGTTGGTGTTTTCCCTTTATTATCCTTTGAAGGGCTAGATTCGTGGAA
AGACGTTGTGTGACTTTGGTTTTACCATGGAATTCTTTGGTTTCNNTCCA
TTCTTNNAATTGGNNGNNNCTTATATTTTCATGAAGGTTTTTTTTTGGCC
TGGNGGTTNTAATATTTAATTTNCCCTTGGATGTTTGGGGGCNCTATTTT
TTTTTCCCTTCNTTCCCTCCTTTTAAAGGATGCCCTCGGCNGCGTTTTTT
TTTTTTTTTTTTTTTTTTTGCGCGTTTTCTTCCCTTTCCGTTTTCCCCTT
CCTTCCTGGCCCCCCTCTTTCCTCCTTCCTTACTTATAACCCCTCCGCCC
CTCTTNCTCTTTCCAGTAGGGTGCGATATATTTAAAAAATCTTTCCACCC
CGCTTGCCGTGTTGCATCTCTCTCCCCCCCTTTCTTTTTTTCTCTTTTTT
CCTTCACCTCTCACCTTTTTTCCTCCTCTTTTTTCCCCCCCTTTTTTCTT
CTCCACTTCTTTTGTTCTTTTTTGCTTTTATCCCTTTTCCCTTTTTTTTC
TTCTCCCTCGCTTTTTCTTTCTCCTAGGCGCCTTCTCCTNGCTTACCCCC
CCCTCCCCTTTTTCCTCCCCTTCTTCTTTTTTTCTTCCTCTTTTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d22.b1 MSMg01no439_d22.b1 CHROMAT_FILE:
MSMg01no439_d22.b1 PHD_FILE: MSMg01no439_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:19 2005
         (376 letters)



>mm_chr11_24261283_24262057
          Length = 775

 Score =  646 bits (334), Expect = 0.0
 Identities = 363/376 (96%), Gaps = 10/376 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctttct-taccagggcatttggcatttgaggaaaaaaaaatcaccttaactct 64
           ||||||||||||  ||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 206 gaattctctttcaatacaagggcatttggcatttgag-aaaaaaaaatcaccttaa-tct 263

                                                                       
Query: 65  tttgctgactccatttcttatcctgaaacaaagcagacatgagatggccgtgggagttac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgctgactccatttcttatcctgaaacaaagcagacatgagatggccgtgggagttac 323

                                                                       
Query: 125 aatttcttaataacaccctcttagagacattcacatcccaattcctggaacttgtggatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatttcttaataacaccctcttagagacattcacatcccaattcctggaacttgtggatg 383

                                                                       
Query: 185 ttgtatcatgtggcaagtccttccaggtgtgatgaagtgaaggctcttgagatgaaatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 ttgtatcatgtggcaagtccttccaggtgtgatgaagtgaaggctct-gagatgaaatga 442

                                                                       
Query: 245 ttcaggactatgcagctatgttctaacggcta------gcatccttagaaaagtaaagca 298
           ||||||||||||||||||||||||||||||||      |||||||||||||||| |||||
Sbjct: 443 ttcaggactatgcagctatgttctaacggctattgctagcatccttagaaaagtgaagca 502

                                                                       
Query: 299 gagagatacctaacataaagagaggaaagggccacatggctatggagtagcaaccactga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagagatacctaacataaagagaggaaagggccacatggctatggagtagcaaccactga 562

                           
Query: 359 tcacccaggtggtgca 374
           ||||||||||||||||
Sbjct: 563 tcacccaggtggtgca 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 775
Length adjustment: 9
Effective length of query: 367
Effective length of database: 766
Effective search space:   281122
Effective search space used:   281122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |