BAC Information

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BAC

Clone NameMSMg01-442I14
Chromosome11 (Build37)
Map Location 71,200,263 - 71,200,397
singlet/doubletsinglet
Overlap genenone
Upstream genePelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442I14.T7 (MSMg01no442_i14.b1)MSMg01-442I14.TJ (MSMg01no442_i14.g1)
ACCAG532160AG532161
length793845
length of high quality
(start - end)
249 (71 - 319)135 (72 - 206)
definitionCHROMAT_FILE: MSMg01no442_i14.b1 PHD_FILE: MSMg01no442_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:44 2005CHROMAT_FILE: MSMg01no442_i14.g1 PHD_FILE: MSMg01no442_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCAGGGATTTCCCAGGCTGGTACCTAACATTAATTTCCAACTTGGC
CCCTAACAAAACTCAAGCCTAGATCCAGTCTCTAGGCTAATCCCCAAAAA
GACCAGTGTTTCCAGGTTACACCCTTAACAAGACCAGTGTCTCTAGGTTA
TTCCCCCAACAAATTTGCACCCCCAGGTTACAAGCCCACCCACTACCTAA
CGATCACCAATACAGAGGGAAGCAGAAATTAAGTTTATAATGACTCCTAG
CACCAGACAATTATGTTAATTTGTCTTAGTATCTTTCCAATTAGATGCTC
GCACATGTACTCCCTGCTTGTTGCTTACTATAAAGCCTGGCCCCAGTAGA
CATTCGGGGCTTTCTCACTACCAAAACCATCCTGCATTTCAGTGGTGCAT
TGGGGTGTGTGTGAGCTACCTCTAATATTACACAGACCCTTCTGTGAGTT
GTACAATATCGATTTCTGCCTTTTTTCAGCTCTTCATCCATTTCTTTCTC
TGCCCTTCTATATCCCTCTTTTTTTCTCTTATTCTTTTTATTTTTCCTTC
CTTTTCTTCTCTCATATTCCCTTTTTTCTTTTTTTTTTTCTTCTCTTCTT
TTCTTCTCCTCTTTTTTTTCTTTCTTTTTTTCCACCACTCTTCTCCTTTT
TTTTTTTTTTTTTTTATCGTCATCCTAATTTTTTTTTTTCTTTTTTCCCC
CCCCTCTTTTTTTTTTTTTCCTTCTTTTATTTTTTTTTCTCTG
ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGCGCAATTCTCTGAAATCTTCTTCTAAGAAGTGAG
AACTGGATGAATGGGTATAGCACTGCCTGCACTCCCGTGACTGGAAAATG
GGTCCATGGAGTCAGTCTGGCTCCTCCGGTTGGCCTAAGTAAGGTGGTTC
CATTGTTGGGAGACTTAGTGTATTAGTTACAGTGACAAAATATCTGGAAT
TTTTTCTTACAAGTGAAAGGATTTGTTTTGACTCACCGTTTTTGTCCATC
ATGTCTGACCAAATGTTTCATCGTTATATGGCCATTTGGTTATATTGTCC
CTCTTCTTTTTTTCTCTATCTTTTCTTATTTTCCCATTTCTATCCCTCCT
CACCTTCCTTTTTTCCCCCCTCTCTTTATCACCTTTTTCCCCCTTTCTTT
TCTTTTCTTTATTTTTTCCCCTCCTTTTTTTTTATACTTGTTTTTCTCTC
CTCTTTATTCTATTCTTTTCTTACCCTTTTTTTTTTCTTCCCTCTTCTTC
TCTCTTTTTCACCTCTTTTCATCTCATCCCTATTTTTCACTATCTCACCT
CTCGCCTTTTTTCTTCTTCTCTGCCTCTTTCTTTCATTTCCTTTCTTTCT
CTTCCTCCTCTCCCCTCTTTTACCACTCATTCATTCTCCTGTCTTTTTTC
ACTATCCTTATTTTCTCACTTCTCTATTTTTTTTTTTTATCCACCTCTTC
TCTCTTTTTCCCACCCACCCCCCCTCTTTTTTTTTCCTCCCACCCTTTTC
TCTCTCACTTTCATTGTTTTTTACTTCATTTTTTTCTTCTCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_i14.g1 MSMg01no442_i14.g1 CHROMAT_FILE:
MSMg01no442_i14.g1 PHD_FILE: MSMg01no442_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:44 2005
         (135 letters)



>mm_chr11_71200063_71200597
          Length = 535

 Score =  238 bits (123), Expect = 1e-67
 Identities = 132/135 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctgaaatcttcttctaagaagtgagaactggatgaatgggtatagcactgcctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttctctgaaatcttcttctaagaagtgagaactggatgaatgggtatagcactgcctgca 276

                                                                       
Query: 61  ctcccgtgactggaaaatgggtccatggagtcagtctggctcctccggttggcctaagta 120
           |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 275 ctccggtgactggaaaatgggtccatggggtcagtctggctcctctggttggcctaagta 216

                          
Query: 121 aggtggttccattgt 135
           |||||||||||||||
Sbjct: 215 aggtggttccattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)