BAC Information

Click to search

BAC

Clone NameMSMg01-443E03
Chromosome11 (Build37)
Map Location 50,523,904 - 50,524,327
singlet/doubletsinglet
Overlap geneAdamts2
Upstream geneCnot6, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443E03.T7 (MSMg01no443_e03.b1)MSMg01-443E03.TJ (MSMg01no443_e03.g1)
ACCAG532707AG532708
length706745
length of high quality
(start - end)
190 (121 - 310)423 (81 - 503)
definitionCHROMAT_FILE: MSMg01no443_e03.b1 PHD_FILE: MSMg01no443_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:48 2005CHROMAT_FILE: MSMg01no443_e03.g1 PHD_FILE: MSMg01no443_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCTAAAATTGCGGCGCTAAACGAACACTATTTCCGAACCGCGCGG
AANCNGNGGTTACTGTACCAGGGGTGAAGANNAAAAGATATACCTTCTTC
TTCCAGCCATTTTTGCTCATTGCTGCTCCCTAATTGGNACTGTAACTGTG
TCTTCAAAAGGCCATCCCATCCTTCTCTCAGACCAGCTGCTTAAGGATCA
TGGATTCCATGAGCTTAGGCCCACTGTCACACTTCTCTGCCTATTATTTC
CTCGGTTAGAACCCATGCTATATTGAATAGCATAACAGTGAACAATGCGC
TCTGTCAGTTTTTATATTTTCTGCNGGCAGCACTCCATACAGGAAAGGCA
AATTTTTATTCCCCACCCCAATCTATTCCAGTAAGGACAAAATGTTGCCG
TTTCCATGATGAAAGTGGCCCCATTGCAGTCCAGCCGACAGTCAAGGTCA
GCTGTCACGATTCCCTTCTCCAGCTCCTCTTTGCCATTTGTCTGTGCTAG
AGATTTTCTCCTGCACTCTTTTGCCGGCTTCTGGGCAGTAATTCTCATTT
CTCACAGAACTTGACATGCATAATTGGATGCTGCCATAGTGAGTCGGACC
AAGAGACCACCGCGAGCTCATATTGTTGTGCCACACCTTTTTATTTATAT
TCTTTGCCCAGCTCCTTATGACTCACACTTGTCGCCAATTCCTGCTTGAC
CTTCGC
TTTCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACGCGAAAATCGGATGTCACTTCTCAACACT
CTGCAGAAGGCAGATAATCATGGCTAACGCATGGCACTGCTATGAAGATG
AATTGACTGGATACTGGCAATACCTGCTTAAAACAATGCCTGAGACAATT
TAAGAGCGACGTGACCCTTTATTAGGAAGCCCAAATGGTTGCCATGGTAG
CAGCCAGGCCTGCTAAGTTGTGGTTATACTTGGGTTGATCCAATCTCTCA
CAGATATACTTGCTTCCCCAGATGTAATGCTGTTTCTTCATTTAACTACA
GAGTGGAGTGTCACGGGGCCACATAAGCCTGGGATAAATGCAATGCTGTC
TTCTGGGGGCATCAATTCTATTTTTAAAAGATCTATAGGTTATGAGTCCT
TCATCCGAAGTGTTTCAGATTTTGTTTTTTACAGAAAAGAGTTTTGCATT
CCATGGCGGGATGTCTCAGGCAAAGATTTTGTGTATACCTGTATCTATAG
CCTGAGGTACCTCACAAAGTATTTTATTACCCTTGTGTTCTAGTACATAT
ATGTCTTTCAGAGGTCAACGCACTGCAATTTTCCTTCCTTTCTTTTTTCC
CTCCCCTTCTATTTCTTCCTCCCTTCCTTTCTTTTCCCTCCCCTTTTTCC
CTTTTTCCCCTCTTTCTTCTCCCTCTTTTTCCCCCTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_e03.g1 MSMg01no443_e03.g1 CHROMAT_FILE:
MSMg01no443_e03.g1 PHD_FILE: MSMg01no443_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:48 2005
         (423 letters)



>mm_chr11_50523704_50524527
          Length = 824

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%), Gaps = 1/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatgtcacttctcaacactctgcagaaggcagataatcatggctaacgcatggcactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatgtcacttctcaacactctgcagaaggcagataatcatggctaacgcatggcactgc 260

                                                                       
Query: 61  tatgaagatgaattgactggatactggcaatacctgcttaaaacaatgcctgagacaatt 120
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaagatgaattgactggatactggcaatacctgcttaaaacaatgcctgagacaatt 320

                                                                       
Query: 121 taagagcgacgtgaccctttattaggaagcccaaatggttgccatggtagcagccaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagcgacgtgaccctttattaggaagcccaaatggttgccatggtagcagccaggcc 380

                                                                       
Query: 181 tgctaagttgtggttatacttgggttgatccaatctctcacagatatacttgcttcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctaagttgtggttatacttgggttgatccaatctctcacagatatacttgcttcccca 440

                                                                       
Query: 241 gatgtaatgctgtttcttcatttaactacagagtggagtgtcacggggccacataagcct 300
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggaaggctgtttcttcatttaactacagagtggagtgtcacggggccacataagcct 500

                                                                       
Query: 301 gggataaatgcaatgctgtcttctgggggcatcaattctatttttaaaagatctataggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggataaatgcaatgctgtcttctgggggcatcaattctatttttaaaagatctataggt 560

                                                                       
Query: 361 tatgagtccttcatccgaagtgtttcagattttgtttttta-cagaaaagagttttgcat 419
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tatgagtccttcatccgaagtgtttcagattttgttttttaacagaaaagagttttgcat 620

               
Query: 420 tcca 423
           ||||
Sbjct: 621 tcca 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)